Basic Information:

  VIRBase ID:  

VHID00666194

  Virus:  

Human polyomavirus 1 (BKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      bkv-miR-B1-3p:  MIMAT0009150          TUBB:  NR_120608     

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Interactor Information:

	Interactor1	Interactor2
Symbol	bkv-miR-B1-3p	TUBB
miRBase Accession/Entrez ID	MIMAT0009150	203068
Organism	Human polyomavirus 1 (BKV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CDCBM6//CSCSC1//M40//OK/SW-cl.56//TUBB1//TUBB5

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TUBB	chr6:30690099(+) A-I      intronic chr6:30690097(+) A-I      intronic chr6:30689968(+) A-I      5'UTR chr6:30689973(+) A-I      5'UTR

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TUBB	chr6:30688136-30688137(+) m6A 5'UTR       24284625//24981863//22575960 chr6:30689416-30689417(+) m6A 5'UTR//intron       24284625//22575960 chr6:30690021-30690022(+) m6A 5'UTR//intron       24284625//22575960 chr6:30690336-30690337(+) m6A 5'UTR//CDS       24284625//22575960 chr6:30690371-30690372(+) m6A 5'UTR//CDS       24284625//22575960 chr6:30690389-30690390(+) m6A 5'UTR//CDS       24284625//22575960 chr6:30690734-30690735(+) m6A 5'UTR//CDS       24284625//22575960 chr6:30690741-30690742(+) m6A 5'UTR//CDS       24284625//22575960 chr6:30690748-30690749(+) m6A CDS       24284625//22575960 chr6:30690785-30690786(+) m6A CDS       24284625//22575960 chr6:30690790-30690791(+) m6A CDS       24284625//22575960 chr6:30691433-30691434(+) m6A CDS       24284625//24981863//27773535//22575960//22608085 chr6:30691515-30691516(+) m6A CDS       24284625//24981863//26404942//27773535//22575960//22608085 chr6:30691702-30691703(+) m6A CDS       24284625//24981863//22575960//22608085 chr6:30691731-30691732(+) m6A CDS       24284625//24981863//22575960//22608085 chr6:30691842-30691843(+) m6A CDS       24284625//24981863//22575960//22608085 chr6:30691848-30691849(+) m6A CDS       24284625//24981863//22575960//22608085 chr6:30691889-30691890(+) m6A CDS       24284625//24981863//22575960//22608085 chr6:30692307-30692308(+) m6A 3'UTR       24284625//27773535 chr6:30692383-30692384(+) m6A 3'UTR       27773535 chr6:30692874-30692875(+) m6A 3'UTR       26404942//27773535//22575960 chr6:30692947-30692948(+) m6A 3'UTR       26404942//27773535 chr6:30693016-30693017(+) m6A 3'UTR       26404942//27773535 chr6:30693127-30693128(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TUBB	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol K562 cells     - Exosome Blood     - Insoluble cytoplasm K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: bkv-miR-B1-3p
Interactor2: TUBB

Evidence Support:

Prediction-Evidence	miRanda//PITA
Support Database	VmiReg