Basic Information:

  VIRBase ID:  

VHID00665159

  Virus:  

Human polyomavirus 1 (BKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      bkv-miR-B1-3p:  MIMAT0009150          CCDC113:  NM_014157     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	bkv-miR-B1-3p	CCDC113
miRBase Accession/Entrez ID	MIMAT0009150	29070
Organism	Human polyomavirus 1 (BKV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	HSPC065

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CCDC113	chr16:58311125(+) A-I      intronic chr16:58311150(+) A-I      intronic chr16:58311158(+) A-I      intronic chr16:58311162(+) A-I      intronic chr16:58311137(+) A-I      intronic chr16:58311136(+) A-I      intronic chr16:58311133(+) A-I      intronic chr16:58311132(+) A-I      intronic chr16:58289509(+) A-I      intronic chr16:58285457(+) A-I      intronic chr16:58285453(+) A-I      intronic chr16:58316052(+) A-I      3'UTR chr16:58316042(+) A-I      3'UTR chr16:58316070(+) A-I      3'UTR chr16:58316030(+) A-I      3'UTR chr16:58291836(+) A-I      intronic chr16:58292788(+) A-I      intronic chr16:58311214(+) A-I      intronic chr16:58285435(+) A-I      intronic chr16:58291756(+) A-I      intronic chr16:58287048(+) A-I      intronic chr16:58285558(+) A-I      intronic chr16:58285349(+) A-I      intronic chr16:58287062(+) A-I      intronic chr16:58311216(+) A-I      intronic chr16:58293163(+) A-I      intronic chr16:58292762(+) A-I      intronic chr16:58292794(+) A-I      intronic chr16:58289643(+) A-I      intronic chr16:58285557(+) A-I      intronic chr16:58292802(+) A-I      intronic chr16:58303155(+) A-I      intronic chr16:58311307(+) A-I      intronic chr16:58285570(+) A-I      intronic chr16:58284414(+) A-I      intronic chr16:58300037(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CCDC113	chr16:58287931-58287932(+) m6A CDS//intron       24209618//24981863 chr16:58287941-58287942(+) m6A CDS//intron       24209618//24981863 chr16:58287972-58287973(+) m6A CDS//intron       24209618//24981863 chr16:58301472-58301473(+) m6A CDS       24981863 chr16:58312491-58312492(+) m6A CDS       24981863 chr16:58313883-58313884(+) m6A 3'UTR       24981863 chr16:58314046-58314047(+) m6A 3'UTR       24981863 chr16:58314058-58314059(+) m6A 3'UTR       24981863 chr16:58314126-58314127(+) m6A 3'UTR       24981863 chr16:58314149-58314150(+) m6A 3'UTR       24981863 chr16:58314164-58314165(+) m6A 3'UTR       24981863 chr16:58314561-58314562(+) m6A 3'UTR       24981863 chr16:58314596-58314597(+) m6A 3'UTR       24981863 chr16:58314608-58314609(+) m6A 3'UTR       24981863 chr16:58314621-58314622(+) m6A 3'UTR       24981863 chr16:58314673-58314674(+) m6A 3'UTR       24981863 chr16:58314698-58314699(+) m6A 3'UTR       24981863 chr16:58315610-58315611(+) m6A 3'UTR       24981863 chr16:58315616-58315617(+) m6A 3'UTR       24981863 chr16:58315648-58315649(+) m6A 3'UTR       24981863 chr16:58315657-58315658(+) m6A 3'UTR       24981863 chr16:58315666-58315667(+) m6A 3'UTR       24981863 chr16:58315721-58315722(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CCDC113	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Exosome Blood     - Nucleoplasm K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):

Interactor1: bkv-miR-B1-3p
Interactor2: CCDC113

Evidence Support:

Prediction-Evidence	cRep//Targetscan
Support Database	RepTar//VmiReg