Detail Information

Basic Information:


  VIRBase ID:  

VHID00664939

  Virus:  

Human polyomavirus 1 (BKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      bkv-miR-B1-3p:           SHANK2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol bkv-miR-B1-3p SHANK2
miRBase
Accession/Entrez ID		 MIMAT0009150 22941
Organism Human polyomavirus 1 (BKV) Homo sapiens
Category miRNA mRNA
Alias - AUTS17//CORTBP1//CTTNBP1//ProSAP1//SHANK//SPANK-3

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SHANK2
chr11:70840643(-) A-I      intronic
chr11:70436184(-) A-I      intronic
chr11:70902134(-) A-I      intronic
chr11:70788240(-) A-I      intronic
chr11:70460664(-) A-I      intronic
chr11:70640844(-) A-I      intronic
chr11:70653852(-) A-I      intronic
chr11:70621395(-) A-I      intronic
chr11:70530570(-) A-I      intronic
chr11:70499985(-) A-I      intronic
chr11:70499907(-) A-I      intronic
chr11:70498864(-) A-I      intronic
chr11:70498807(-) A-I      intronic
chr11:70498667(-) A-I      intronic
chr11:70487339(-) A-I      intronic
chr11:70487333(-) A-I      intronic
chr11:70628381(-) A-I      intronic
chr11:70438119(-) A-I      intronic
chr11:70437374(-) A-I      intronic
chr11:70437357(-) A-I      intronic
chr11:70437190(-) A-I      intronic
chr11:70436069(-) A-I      intronic
chr11:70402599(-) A-I      intronic
chr11:70436046(-) A-I      intronic
chr11:70436045(-) A-I      intronic
chr11:70436014(-) A-I      intronic
chr11:70436002(-) A-I      intronic
chr11:70435151(-) A-I      intronic
chr11:70617226(-) A-I      intronic
chr11:70435127(-) A-I      intronic
chr11:70654633(-) A-I      intronic
chr11:70889850(-) A-I      intronic
chr11:70487231(-) A-I      intronic
chr11:70435038(-) A-I      intronic
chr11:70435023(-) A-I      intronic
chr11:70907143(-) A-I      intronic
chr11:70435020(-) A-I      intronic
chr11:70433970(-) A-I      intronic
chr11:70433964(-) A-I      intronic
chr11:70433956(-) A-I      intronic
chr11:70433954(-) A-I      intronic
chr11:70433925(-) A-I      intronic
chr11:70433912(-) A-I      intronic
chr11:70433907(-) A-I      intronic
chr11:70433902(-) A-I      intronic
chr11:70402618(-) A-I      intronic
chr11:70433901(-) A-I      intronic
chr11:70402610(-) A-I      intronic
chr11:70641738(-) A-I      intronic
chr11:70435031(-) A-I      intronic
chr11:70403065(-) A-I      intronic
chr11:70401825(-) A-I      intronic
chr11:70618526(-) A-I      intronic
chr11:70930816(-) A-I      intronic
chr11:70928199(-) A-I      intronic
chr11:70928196(-) A-I      intronic
chr11:70928060(-) A-I      intronic
chr11:70907399(-) A-I      intronic
chr11:70907362(-) A-I      intronic
chr11:70786425(-) A-I      intronic
chr11:70786424(-) A-I      intronic
chr11:70764857(-) A-I      intronic
chr11:70764749(-) A-I      intronic
chr11:70764743(-) A-I      intronic
chr11:70641790(-) A-I      intronic
chr11:70641667(-) A-I      intronic
chr11:70640934(-) A-I      intronic
chr11:70640933(-) A-I      intronic
chr11:70401633(-) A-I      intronic
chr11:70640831(-) A-I      intronic
chr11:70640830(-) A-I      intronic
chr11:70640829(-) A-I      intronic
chr11:70640818(-) A-I      intronic
chr11:70640731(-) A-I      intronic
chr11:70640730(-) A-I      intronic
chr11:70640723(-) A-I      intronic
chr11:70640303(-) A-I      intronic
chr11:70640246(-) A-I      intronic
chr11:70640220(-) A-I      intronic
chr11:70621525(-) A-I      intronic
chr11:70621406(-) A-I      intronic
chr11:70393530(-) A-I      intronic
chr11:70620657(-) A-I      intronic
chr11:70361251(-) A-I      intronic
chr11:70361230(-) A-I      intronic
chr11:70620652(-) A-I      intronic
chr11:70621349(-) A-I      intronic
chr11:70361203(-) A-I      intronic
chr11:70620623(-) A-I      intronic
chr11:70618362(-) A-I      intronic
chr11:70617076(-) A-I      intronic
chr11:70618488(-) A-I      intronic
chr11:70575534(-) A-I      intronic
chr11:70617077(-) A-I      intronic
chr11:70617127(-) A-I      intronic
chr11:70928174(-) A-I      intronic
chr11:70918364(-) A-I      intronic
chr11:70754068(-) A-I      intronic
chr11:70885817(-) A-I      intronic
chr11:70840563(-) A-I      intronic
chr11:70620581(-) A-I      intronic
chr11:70692466(-) A-I      intronic
chr11:70840656(-) A-I      intronic
chr11:70753989(-) A-I      intronic
chr11:70754084(-) A-I      intronic
chr11:70641753(-) A-I      intronic
chr11:70839888(-) A-I      intronic
chr11:70753971(-) A-I      intronic
chr11:70663937(-) A-I      intronic
chr11:70753985(-) A-I      intronic
chr11:70840572(-) A-I      intronic
chr11:70641680(-) A-I      intronic
chr11:70640800(-) A-I      intronic
chr11:70617102(-) A-I      intronic
chr11:70640791(-) A-I      intronic
chr11:70929383(-) A-I      intronic
chr11:70620600(-) A-I      intronic
chr11:70598306(-) A-I      intronic
chr11:70640264(-) A-I      intronic
chr11:70547679(-) A-I      intronic
chr11:70617154(-) A-I      intronic
chr11:70643681(-) A-I      intronic
chr11:70530582(-) A-I      intronic
chr11:70617230(-) A-I      intronic
chr11:70864836(-) A-I      intronic
chr11:70617097(-) A-I      intronic
chr11:70907429(-) A-I      intronic
chr11:70754049(-) A-I      intronic
chr11:70918401(-) A-I      intronic
chr11:70839868(-) A-I      intronic
chr11:70736847(-) A-I      intronic
chr11:70618433(-) A-I      intronic
chr11:70529956(-) A-I      intronic
chr11:70929438(-) A-I      intronic
chr11:70931121(-) A-I      intronic
chr11:70918366(-) A-I      intronic
chr11:70753950(-) A-I      intronic
chr11:70617194(-) A-I      intronic
chr11:70618429(-) A-I      intronic
chr11:70837838(-) A-I      intronic
chr11:70640342(-) A-I      intronic
chr11:70617274(-) A-I      intronic
chr11:70617178(-) A-I      intronic
chr11:70641649(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SHANK2
chr11:70617097(-) A-I intron -    15342557
chr11:70617102(-) A-I intron -    15342557
chr11:70617154(-) A-I intron -    15342557
chr11:70617178(-) A-I intron -    15342557
chr11:70617194(-) A-I intron -    15342557
chr11:70617226(-) A-I intron -    15342557
chr11:70617230(-) A-I intron -    15342557
chr11:70617274(-) A-I intron -    15342557
chr11:70618429(-) A-I intron -    15342557
chr11:70618433(-) A-I intron -    15342557
chr11:70618488(-) A-I intron -    15342557
chr11:70618526(-) A-I intron -    15342557
chr11:70753950(-) A-I intron -    15342557
chr11:70753971(-) A-I intron -    15342557
chr11:70753985(-) A-I intron -    15342557
chr11:70753989(-) A-I intron -    15342557
chr11:70754084(-) A-I intron -    15342557
chr11:70935766(-) A-I exon 5'UTR    15342557
chr11:70641649(-) A-I intron -    21960545

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SHANK2
chr11:70314008-70314009(-) m6A 3'UTR       27773535
chr11:70314046-70314047(-) m6A 3'UTR       27773535
chr11:70314110-70314111(-) m6A 3'UTR       27773535
chr11:70315647-70315648(-) m6A 3'UTR//exon       27773535
chr11:70315831-70315832(-) m6A 3'UTR//exon       27773535
chr11:70315906-70315907(-) m6A 3'UTR//exon       27773535
chr11:70316974-70316975(-) m6A 3'UTR//exon       27773535
chr11:70316979-70316980(-) m6A 3'UTR//exon       27773535
chr11:70316985-70316986(-) m6A 3'UTR//exon       27773535
chr11:70317035-70317036(-) m6A 3'UTR//exon       27773535
chr11:70317051-70317052(-) m6A 3'UTR//exon       27773535
chr11:70317089-70317090(-) m6A 3'UTR//exon       27773535
chr11:70317699-70317700(-) m6A 3'UTR//exon       27773535
chr11:70317713-70317714(-) m6A 3'UTR//exon       27773535
chr11:70317718-70317719(-) m6A 3'UTR//exon       27773535
chr11:70317740-70317741(-) m6A 3'UTR//exon       27773535
chr11:70318591-70318592(-) m6A 3'UTR//exon       27773535
chr11:70318620-70318621(-) m6A 3'UTR//exon       27773535
chr11:70318751-70318752(-) m6A 3'UTR//exon       25456834//27773535
chr11:70318801-70318802(-) m6A 3'UTR//exon       25456834//24981863//27773535
chr11:70318910-70318911(-) m6A 3'UTR//exon       25456834//24981863//27773535
chr11:70318948-70318949(-) m6A 3'UTR//exon       25456834//24981863//27773535
chr11:70318980-70318981(-) m6A 3'UTR//CDS//exon       25456834//24981863//27773535
chr11:70318991-70318992(-) m6A 3'UTR//CDS//exon       25456834//24981863//27773535
chr11:70319010-70319011(-) m6A 3'UTR//CDS//exon       25456834//24981863//26404942//27773535//22575960
chr11:70319052-70319053(-) m6A 3'UTR//CDS//exon       25456834//24981863//26404942//27773535//22575960//22608085
chr11:70319067-70319068(-) m6A 3'UTR//CDS//exon       25456834//24981863//26404942//27773535//22575960//22608085
chr11:70319097-70319098(-) m6A 3'UTR//CDS//exon       25456834//24981863//26404942//27773535//22608085
chr11:70319117-70319118(-) m6A 3'UTR//CDS//exon       25456834//24981863//26404942//27773535
chr11:70319127-70319128(-) m6A 3'UTR//CDS//exon       25456834//24981863//26404942//27773535
chr11:70319159-70319160(-) m6A 3'UTR//CDS//exon       25456834//24981863//26404942//27773535
chr11:70319164-70319165(-) m6A 3'UTR//CDS//exon       25456834//24981863//26404942//27773535
chr11:70319180-70319181(-) m6A 3'UTR//CDS//exon       25456834//24981863//27773535
chr11:70319256-70319257(-) m6A 3'UTR//CDS//exon       25456834//24981863//27773535
chr11:70319362-70319363(-) m6A 3'UTR//CDS//exon       25456834//24981863//27773535
chr11:70319370-70319371(-) m6A 3'UTR//CDS//exon       25456834//24981863//27773535
chr11:70319413-70319414(-) m6A 3'UTR//CDS//exon       25456834//24981863//27773535
chr11:70319422-70319423(-) m6A 3'UTR//CDS//exon       25456834//24981863//27773535
chr11:70319653-70319654(-) m6A exon//intron       -
chr11:70331462-70331463(-) m6A CDS//intron       25456834//24981863//27773535
chr11:70331493-70331494(-) m6A CDS//intron       25456834//24981863//27773535
chr11:70331514-70331515(-) m6A CDS//intron       24209618//25456834//24981863//27773535
chr11:70331596-70331597(-) m6A CDS//intron       25456834//24981863//27773535
chr11:70331768-70331769(-) m6A CDS//intron       24981863//26404942//27773535
chr11:70331814-70331815(-) m6A CDS//intron       24981863//27773535
chr11:70331913-70331914(-) m6A CDS//intron       27773535
chr11:70331988-70331989(-) m6A CDS//intron       25456834//24981863//27773535
chr11:70332015-70332016(-) m6A CDS//intron       25456834//24981863//27773535
chr11:70332042-70332043(-) m6A CDS//intron       25456834//24981863//27773535
chr11:70332090-70332091(-) m6A CDS//intron       25456834//24981863//27773535
chr11:70332198-70332199(-) m6A CDS//intron       24981863//27773535
chr11:70332277-70332278(-) m6A CDS//intron       24981863//27773535
chr11:70332334-70332335(-) m6A CDS//intron       27773535
chr11:70332372-70332373(-) m6A CDS//intron       27773535
chr11:70332423-70332424(-) m6A CDS//intron       27773535
chr11:70332486-70332487(-) m6A CDS//intron       25456834//27773535
chr11:70332507-70332508(-) m6A CDS//intron       25456834//24981863//27773535
chr11:70332531-70332532(-) m6A CDS//intron       25456834//24981863//27773535
chr11:70332547-70332548(-) m6A CDS//intron       25456834//24981863//27773535
chr11:70332558-70332559(-) m6A CDS//intron       25456834//24981863//27773535
chr11:70332584-70332585(-) m6A CDS//intron       25456834//24981863//27773535
chr11:70332594-70332595(-) m6A CDS//intron       25456834//24981863//27773535
chr11:70332662-70332663(-) m6A CDS//intron       25456834//24981863//27773535
chr11:70332698-70332699(-) m6A CDS//intron       25456834//24981863//27773535
chr11:70332726-70332727(-) m6A CDS//intron       25456834//24981863//27773535
chr11:70332933-70332934(-) m6A CDS//intron       -
chr11:70332990-70332991(-) m6A CDS//intron       25456834
chr11:70333080-70333081(-) m6A CDS//intron       25456834
chr11:70333104-70333105(-) m6A CDS//intron       25456834
chr11:70333335-70333336(-) m6A CDS//intron       27773535
chr11:70333503-70333504(-) m6A CDS//intron       -
chr11:70333512-70333513(-) m6A CDS//intron       24981863
chr11:70333527-70333528(-) m6A CDS//intron       24981863
chr11:70333740-70333741(-) m6A CDS//intron       27773535
chr11:70333752-70333753(-) m6A CDS//intron       27773535
chr11:70514768-70514769(-) m6A 3'UTR//intron       27773535
chr11:70742614-70742615(-) m6A CDS//exon       27773535
chr11:70742625-70742626(-) m6A CDS//exon       27773535
chr11:70805731-70805732(-) m6A 3'UTR//CDS       27773535
chr11:70820992-70820993(-) m6A 3'UTR//CDS       27773535
chr11:70821027-70821028(-) m6A 3'UTR//CDS       27773535
chr11:70858278-70858279(-) m6A CDS       24981863//27773535
chr11:70858295-70858296(-) m6A CDS       24981863//27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SHANK2
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Membrane HCC cell line (HepG2)     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: bkv-miR-B1-3p
Interactor2: SHANK2

Evidence Support:


Prediction-Evidence miRanda//PITA
Support Database VmiReg

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