Detail Information

Basic Information:


  VIRBase ID:  

VHID00664758

  Virus:  

Human polyomavirus 1 (BKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      bkv-miR-B1-3p:           SRGAP3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol bkv-miR-B1-3p SRGAP3
miRBase
Accession/Entrez ID		 MIMAT0009150 9901
Organism Human polyomavirus 1 (BKV) Homo sapiens
Category miRNA mRNA
Alias - ARHGAP14//MEGAP//SRGAP2//WRP

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SRGAP3
chr3:9284542(-) A-I      intronic
chr3:9090448(-) A-I      intronic
chr3:9090451(-) A-I      intronic
chr3:9090456(-) A-I      intronic
chr3:9169224(-) A-I      intronic
chr3:9037084(-) A-I      intronic
chr3:9037124(-) A-I      intronic
chr3:9091539(-) A-I      intronic
chr3:9091543(-) A-I      intronic
chr3:9091639(-) A-I      intronic
chr3:9261413(-) A-I      intronic
chr3:9102794(-) A-I      intronic
chr3:9102869(-) A-I      intronic
chr3:9136497(-) A-I      intronic
chr3:9137489(-) A-I      intronic
chr3:9168896(-) A-I      intronic
chr3:9168921(-) A-I      intronic
chr3:9217754(-) A-I      intronic
chr3:9219830(-) A-I      intronic
chr3:9090494(-) A-I      intronic
chr3:9090502(-) A-I      intronic
chr3:9283540(-) A-I      intronic
chr3:9092839(-) A-I      intronic
chr3:9283543(-) A-I      intronic
chr3:9283544(-) A-I      intronic
chr3:9283667(-) A-I      intronic
chr3:9283679(-) A-I      intronic
chr3:9284633(-) A-I      intronic
chr3:9285125(-) A-I      intronic
chr3:9102250(-) A-I      intronic
chr3:9092851(-) A-I      intronic
chr3:9217775(-) A-I      intronic
chr3:9090439(-) A-I      intronic
chr3:9223638(-) A-I      intronic
chr3:9223684(-) A-I      intronic
chr3:9261370(-) A-I      intronic
chr3:9217703(-) A-I      intronic
chr3:9284431(-) A-I      intronic
chr3:9036921(-) A-I      intronic
chr3:9102274(-) A-I      intronic
chr3:9223738(-) A-I      intronic
chr3:9090339(-) A-I      intronic
chr3:9102804(-) A-I      intronic
chr3:9284256(-) A-I      intronic
chr3:9261290(-) A-I      intronic
chr3:9283748(-) A-I      intronic
chr3:9092969(-) A-I      intronic
chr3:9284545(-) A-I      intronic
chr3:9102705(-) A-I      intronic
chr3:9284565(-) A-I      intronic
chr3:9284506(-) A-I      intronic
chr3:9190625(-) A-I      intronic
chr3:9138742(-) A-I      intronic
chr3:9283662(-) A-I      intronic
chr3:9283699(-) A-I      intronic
chr3:9072702(-) A-I      intronic
chr3:9082442(-) A-I      intronic
chr3:9217841(-) A-I      intronic
chr3:9092782(-) A-I      intronic
chr3:9091818(-) A-I      intronic
chr3:9217702(-) A-I      intronic
chr3:9071645(-) A-I      intronic
chr3:9284108(-) A-I      intronic
chr3:9132593(-) A-I      intronic
chr3:9137517(-) A-I      intronic
chr3:9136537(-) A-I      intronic
chr3:9284551(-) A-I      intronic
chr3:9071754(-) A-I      intronic
chr3:9284219(-) A-I      intronic
chr3:9092808(-) A-I      intronic
chr3:9102808(-) A-I      intronic
chr3:9082371(-) A-I      intronic
chr3:9082438(-) A-I      intronic
chr3:9227494(-) A-I      intronic
chr3:9082439(-) A-I      intronic
chr3:9223600(-) A-I      intronic
chr3:9136561(-) A-I      intronic
chr3:9090386(-) A-I      intronic
chr3:9102792(-) A-I      intronic
chr3:9219840(-) A-I      intronic
chr3:9137670(-) A-I      intronic
chr3:9137673(-) A-I      intronic
chr3:9102816(-) A-I      intronic
chr3:9283604(-) A-I      intronic
chr3:9283573(-) A-I      intronic
chr3:9283581(-) A-I      intronic
chr3:9102248(-) A-I      intronic
chr3:9219876(-) A-I      intronic
chr3:9105085(-) A-I      intronic
chr3:9190715(-) A-I      intronic
chr3:9071653(-) A-I      intronic
chr3:9102833(-) A-I      intronic
chr3:9190776(-) A-I      intronic
chr3:9071569(-) A-I      intronic
chr3:9102187(-) A-I      intronic
chr3:9283539(-) A-I      intronic
chr3:9091555(-) A-I      intronic
chr3:9102396(-) A-I      intronic
chr3:9136555(-) A-I      intronic
chr3:9224429(-) A-I      intronic
chr3:9284236(-) A-I      intronic
chr3:9223748(-) A-I      intronic
chr3:9071753(-) A-I      intronic
chr3:9217863(-) A-I      intronic
chr3:9091790(-) A-I      intronic
chr3:9048046(-) A-I      intronic
chr3:9169260(-) A-I      intronic
chr3:9261435(-) A-I      intronic
chr3:9263046(-) A-I      intronic
chr3:9284489(-) A-I      intronic
chr3:9102351(-) A-I      intronic
chr3:9138773(-) A-I      intronic
chr3:9137704(-) A-I      intronic
chr3:9091662(-) A-I      intronic
chr3:9261291(-) A-I      intronic
chr3:9071714(-) A-I      intronic
chr3:9072771(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SRGAP3
chr3:9217863(-) A-G intron -    22484847
chr3:9219835(-) A-G intron -    22484847
chr3:9219840(-) A-G intron -    22484847
chr3:9261345(-) A-G intron -    22484847
chr3:9261435(-) A-G intron -    22484847
chr3:9283573(-) A-G intron -    22484847
chr3:9283581(-) A-G intron -    22484847
chr3:9284108(-) A-G intron -    22484847
chr3:9284139(-) A-G intron -    22484847
chr3:9284175(-) A-G intron -    22484847
chr3:9284256(-) A-G intron -    22484847
chr3:9284506(-) A-G intron -    22484847
chr3:9284545(-) A-G intron -    22484847
chr3:9284551(-) A-G intron -    22484847
chr3:9284565(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SRGAP3
chr3:9025068-9025069(-) m6A 3'UTR       25456834
chr3:9025107-9025108(-) m6A 3'UTR       25456834
chr3:9025112-9025113(-) m6A 3'UTR       25456834
chr3:9026401-9026402(-) m6A 3'UTR       -
chr3:9026440-9026441(-) m6A 3'UTR       25456834
chr3:9026508-9026509(-) m6A 3'UTR       25456834//24981863//27773535//22608085
chr3:9026547-9026548(-) m6A 3'UTR       25456834//24981863//27773535//22608085
chr3:9026553-9026554(-) m6A 3'UTR       25456834//24981863//27773535//22608085
chr3:9026559-9026560(-) m6A 3'UTR       25456834//24981863//27773535//22608085
chr3:9026615-9026616(-) m6A 3'UTR       24981863//27773535//22608085
chr3:9026629-9026630(-) m6A 3'UTR       24981863//27773535//22608085
chr3:9026666-9026667(-) m6A 3'UTR       27773535//22608085
chr3:9026697-9026698(-) m6A 3'UTR       27773535
chr3:9027011-9027012(-) m6A 3'UTR       25456834//24981863//27371828//22575960
chr3:9027221-9027222(-) m6A CDS       25456834//24981863//27773536
chr3:9027503-9027504(-) m6A CDS       24284625//25456834//27371828//27773536
chr3:9027524-9027525(-) m6A CDS       24284625//25456834//27371828//27773536
chr3:9027557-9027558(-) m6A CDS       24284625//25456834//24981863//27371828//27773536
chr3:9027571-9027572(-) m6A CDS       24284625//25456834//24981863//27371828//27773536
chr3:9027603-9027604(-) m6A CDS       24284625//25456834//24981863//27371828//27773536
chr3:9032229-9032230(-) m6A CDS       27371828//27773536
chr3:9290606-9290607(-) m6A CDS//exon//intron       24981863//22608085
chr3:9290622-9290623(-) m6A CDS//exon//intron       25456834//24981863//27371828//22608085
chr3:9290667-9290668(-) m6A 5'UTR//exon//intron       25456834//24981863//27371828//22608085
chr3:9290696-9290697(-) m6A 5'UTR//exon//intron       25456834//24981863//27773535//27371828//22608085
chr3:9290744-9290745(-) m6A 5'UTR//exon//intron       25456834//24981863//27773535//27371828//22608085
chr3:9291240-9291241(-) m6A exon//intron       25456834//27371828//22608085
chr3:9291247-9291248(-) m6A exon//intron       25456834//27371828//22608085
chr3:9291284-9291285(-) m6A exon//intron       27371828//22608085
chr3:9334290-9334291(-) m6A intron       27773535
chr3:9334355-9334356(-) m6A intron       27773535
chr3:9334384-9334385(-) m6A intron       27773535
chr3:9334583-9334584(-) m6A intron       27773535
chr3:9334608-9334609(-) m6A intron       27773535
chr3:9367701-9367702(-) m6A exon       27773535//22608085
chr3:9367718-9367719(-) m6A exon       27773535//22608085
chr3:9367769-9367770(-) m6A exon       27773535//22608085
chr3:9367784-9367785(-) m6A exon       27773535//22608085
chr3:9367813-9367814(-) m6A exon       27773535//22608085
chr3:9367826-9367827(-) m6A exon       27773535//22608085
chr3:9372219-9372220(-) m6A exon       27773535//22608085
chr3:9391468-9391469(-) m6A intron       27773535//22608085
chr3:9391563-9391564(-) m6A intron       25456834//27773535//22608085
chr3:9391587-9391588(-) m6A intron       24284625//25456834//24981863//27773535//22608085
chr3:9391613-9391614(-) m6A intron       24284625//25456834//24981863//27773535//22608085
chr3:9391618-9391619(-) m6A intron       24284625//25456834//24981863//27773535//22608085
chr3:9391628-9391629(-) m6A intron       24284625//25456834//24981863//27773535//22608085
chr3:9391656-9391657(-) m6A intron       24284625//25456834//27773535//22608085
chr3:9391691-9391692(-) m6A intron       24284625//25456834//27773535//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SRGAP3
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: bkv-miR-B1-3p
Interactor2: SRGAP3

Evidence Support:


Prediction-Evidence cRep//PITA
Support Database RepTar//VmiReg

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