Basic Information:

  VIRBase ID:  

VHID00662971

  Virus:  

Human polyomavirus 1 (BKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      bkv-miR-B1-5p:  MIMAT0009149          UBXN2B:  NR_156456     

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Interactor Information:

	Interactor1	Interactor2
Symbol	bkv-miR-B1-5p	UBXN2B
miRBase Accession/Entrez ID	MIMAT0009149	137886
Organism	Human polyomavirus 1 (BKV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	p37

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	UBXN2B	chr8:59345203(+) A-I      intronic chr8:59337741(+) A-I      intronic chr8:59337699(+) A-I      intronic chr8:59338892(+) A-I      intronic chr8:59339908(+) A-I      intronic chr8:59339936(+) A-I      intronic chr8:59339948(+) A-I      intronic chr8:59343779(+) A-I      intronic chr8:59343787(+) A-I      intronic chr8:59356088(+) A-I      intronic chr8:59345172(+) A-I      intronic chr8:59337690(+) A-I      intronic chr8:59345202(+) A-I      intronic chr8:59332238(+) A-I      intronic chr8:59345215(+) A-I      intronic chr8:59346237(+) A-I      intronic chr8:59346240(+) A-I      intronic chr8:59337670(+) A-I      intronic chr8:59338883(+) A-I      intronic chr8:59356096(+) A-I      intronic chr8:59356102(+) A-I      intronic chr8:59356113(+) A-I      intronic chr8:59337664(+) A-I      intronic chr8:59338827(+) A-I      intronic chr8:59332228(+) A-I      intronic chr8:59338870(+) A-I      intronic chr8:59360807(+) A-I      3'UTR chr8:59360789(+) A-I      3'UTR chr8:59360797(+) A-I      3'UTR chr8:59360826(+) A-I      3'UTR chr8:59339827(+) A-I      intronic chr8:59346313(+) A-I      intronic chr8:59339859(+) A-I      intronic chr8:59339901(+) A-I      intronic chr8:59356090(+) A-I      intronic chr8:59346152(+) A-I      intronic chr8:59339029(+) A-I      intronic chr8:59343788(+) A-I      intronic chr8:59339764(+) A-I      intronic chr8:59353833(+) A-I      intronic chr8:59353762(+) A-I      intronic chr8:59359497(+) A-I      intronic chr8:59339880(+) A-I      intronic chr8:59330677(+) A-I      intronic chr8:59330787(+) A-I      intronic chr8:59343830(+) A-I      intronic chr8:59343811(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	UBXN2B	chr8:59339764(+) A-G intron -    22484847 chr8:59343788(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	UBXN2B	chr8:59325878-59325879(+) m6A exon//intron       24209618//25456834//24981863 chr8:59325890-59325891(+) m6A exon//intron       24209618//24981863 chr8:59325898-59325899(+) m6A exon//intron       24209618//24981863 chr8:59329467-59329468(+) m6A CDS//exon       24981863 chr8:59360168-59360169(+) m6A 3'UTR       24284625//24981863//22608085 chr8:59360188-59360189(+) m6A 3'UTR       24284625//24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	UBXN2B	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: bkv-miR-B1-5p
Interactor2: UBXN2B

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg