Basic Information:

  VIRBase ID:  

VHID00662220

  Virus:  

Human polyomavirus 1 (BKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      bkv-miR-B1-5p:  MIMAT0009149          PPP1R3B:  NM_024607     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	bkv-miR-B1-5p	PPP1R3B
miRBase Accession/Entrez ID	MIMAT0009149	79660
Organism	Human polyomavirus 1 (BKV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	GL//PPP1R4//PTG

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PPP1R3B	chr8:9001009(-) A-I      intronic chr8:9001125(-) A-I      intronic chr8:8999767(-) A-I      intronic chr8:9001126(-) A-I      intronic chr8:8999775(-) A-I      intronic chr8:9001200(-) A-I      intronic chr8:9001202(-) A-I      intronic chr8:9001204(-) A-I      intronic chr8:8999766(-) A-I      intronic chr8:9002372(-) A-I      intronic chr8:9001136(-) A-I      intronic chr8:9001130(-) A-I      intronic chr8:9001082(-) A-I      intronic chr8:8999808(-) A-I      intronic chr8:8999806(-) A-I      intronic chr8:8999774(-) A-I      intronic chr8:8999771(-) A-I      intronic chr8:9001008(-) A-I      intronic chr8:9001112(-) A-I      intronic chr8:8996557(-) A-I      3'UTR chr8:8997119(-) A-I      3'UTR chr8:8997130(-) A-I      3'UTR chr8:8997131(-) A-I      3'UTR chr8:8996491(-) A-I      3'UTR chr8:8997137(-) A-I      3'UTR chr8:8997097(-) A-I      3'UTR chr8:8996683(-) A-I      3'UTR chr8:8996603(-) A-I      3'UTR chr8:9003508(-) A-I      intronic chr8:9001046(-) A-I      intronic chr8:8996605(-) A-I      3'UTR chr8:8996722(-) A-I      3'UTR chr8:9004601(-) A-I      intronic chr8:9001027(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PPP1R3B	chr8:8993769-8993770(-) m6A 3'UTR       27773535 chr8:8993774-8993775(-) m6A 3'UTR       27773535 chr8:8993956-8993957(-) m6A 3'UTR       24981863//27773535 chr8:8993963-8993964(-) m6A 3'UTR       24981863//27773535 chr8:8994028-8994029(-) m6A 3'UTR       24981863//27773535//22608085 chr8:8994036-8994037(-) m6A 3'UTR       24981863//27773535//22608085 chr8:8994140-8994141(-) m6A 3'UTR       24209618//25456834//24981863//27773535//27371828//22608085 chr8:8994150-8994151(-) m6A 3'UTR       24209618//25456834//24981863//27773535//27371828//22608085 chr8:8994164-8994165(-) m6A 3'UTR       24209618//25456834//24981863//27773535//27371828//22608085 chr8:8994200-8994201(-) m6A 3'UTR       24209618//25456834//24981863//27773535//27371828//22608085 chr8:8994245-8994246(-) m6A 3'UTR       25456834//24981863//27371828//22608085 chr8:8995260-8995261(-) m6A 3'UTR       27773535 chr8:8995281-8995282(-) m6A 3'UTR       24284625//27773535 chr8:8995422-8995423(-) m6A 3'UTR       27773535 chr8:8995489-8995490(-) m6A 3'UTR       27773535 chr8:8995677-8995678(-) m6A 3'UTR       24981863 chr8:8995694-8995695(-) m6A 3'UTR       24981863 chr8:8995715-8995716(-) m6A 3'UTR       24981863 chr8:8996402-8996403(-) m6A 3'UTR       25456834//24981863//27773535//27371828 chr8:8996427-8996428(-) m6A 3'UTR       25456834//24981863//27773535//27371828 chr8:8996436-8996437(-) m6A 3'UTR       25456834//24981863//27773535//27371828 chr8:8996455-8996456(-) m6A 3'UTR       25456834//24981863//27773535//27371828 chr8:8996524-8996525(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr8:8996620-8996621(-) m6A 3'UTR       24209618//25456834//24981863//27773535//22608085 chr8:8996643-8996644(-) m6A 3'UTR       24209618//24981863//27773535//22608085 chr8:8996734-8996735(-) m6A 3'UTR       24209618//24981863//27773535//22608085 chr8:8996769-8996770(-) m6A 3'UTR       24209618//24981863//27773535//22608085 chr8:8996851-8996852(-) m6A 3'UTR       24209618//24981863//27773535//22608085 chr8:8996901-8996902(-) m6A 3'UTR       24209618//24981863//27773535//22575960//22608085 chr8:8996907-8996908(-) m6A 3'UTR       24209618//24981863//27773535//22575960//22608085 chr8:8996928-8996929(-) m6A 3'UTR       24209618//24981863//27773535//22575960//22608085 chr8:8996975-8996976(-) m6A 3'UTR       24284625//24209618//24981863//27773535//27371828//22608085 chr8:8997008-8997009(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr8:8997073-8997074(-) m6A 3'UTR       24209618//25456834//24981863//27773535//27371828//22608085 chr8:8997085-8997086(-) m6A 3'UTR       24209618//25456834//24981863//27773535//27371828//22608085 chr8:8997129-8997130(-) m6A 3'UTR       24209618//25456834//24981863//27773535//27371828//22608085 chr8:8997154-8997155(-) m6A 3'UTR       24209618//25456834//24981863//27371828 chr8:8997253-8997254(-) m6A 3'UTR       24209618//24981863 chr8:8997276-8997277(-) m6A 3'UTR       24209618//24981863 chr8:8997510-8997511(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr8:8997526-8997527(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr8:8997578-8997579(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr8:8997651-8997652(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr8:8997905-8997906(-) m6A 3'UTR       24284625//25456834//24981863//27371828//22608085 chr8:8997950-8997951(-) m6A 3'UTR       24284625//25456834//27371828//22608085 chr8:8998149-8998150(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr8:8998205-8998206(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr8:8998265-8998266(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr8:8998414-8998415(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr8:8998475-8998476(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr8:8998493-8998494(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr8:8998507-8998508(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr8:8998592-8998593(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr8:8998598-8998599(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr8:8998616-8998617(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr8:8998640-8998641(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr8:8998686-8998687(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr8:8998703-8998704(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr8:8998736-8998737(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr8:8998751-8998752(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr8:8998793-8998794(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr8:8998871-8998872(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr8:8998961-8998962(-) m6A CDS       27773535 chr8:8999065-8999066(-) m6A CDS       27773535 chr8:8999147-8999148(-) m6A CDS       24981863 chr8:9008167-9008168(-) m6A 5'UTR//intron       24981863//27371828 chr8:9008192-9008193(-) m6A 5'UTR//intron       24981863//27371828 chr8:9008860-9008861(-) m6A 5'UTR       24981863//27371828//27773536 chr8:9008873-9008874(-) m6A 5'UTR       27773536 chr8:9008965-9008966(-) m6A 5'UTR       24981863//27773536 chr8:9008990-9008991(-) m6A 5'UTR       24981863//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PPP1R3B	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):

Interactor1: bkv-miR-B1-5p
Interactor2: PPP1R3B

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg