Detail Information

Basic Information:


  VIRBase ID:  

VHID00661712

  Virus:  

Human polyomavirus 1 (BKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      bkv-miR-B1-5p:           THUMPD1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol bkv-miR-B1-5p THUMPD1
miRBase
Accession/Entrez ID		 MIMAT0009149 55623
Organism Human polyomavirus 1 (BKV) Homo sapiens
Category miRNA mRNA
Alias - Tan1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR THUMPD1
chr16:20750646(-) A-I      intronic
chr16:20750632(-) A-I      intronic
chr16:20750975(-) A-I      intronic
chr16:20750693(-) A-I      intronic
chr16:20750926(-) A-I      intronic
chr16:20750971(-) A-I      intronic
chr16:20751086(-) A-I      intronic
chr16:20751137(-) A-I      intronic
chr16:20751141(-) A-I      intronic
chr16:20751569(-) A-I      intronic
chr16:20751672(-) A-I      intronic
chr16:20752459(-) A-I      intronic
chr16:20750537(-) A-I      intronic
chr16:20750665(-) A-I      intronic
chr16:20750970(-) A-I      intronic
chr16:20752415(-) A-I      intronic
chr16:20751583(-) A-I      intronic
chr16:20750566(-) A-I      intronic
chr16:20751680(-) A-I      intronic
chr16:20752561(-) A-I      intronic
chr16:20750963(-) A-I      intronic
chr16:20750886(-) A-I      intronic
chr16:20750717(-) A-I      intronic
chr16:20750565(-) A-I      intronic
chr16:20750757(-) A-I      intronic
chr16:20751570(-) A-I      intronic
chr16:20752472(-) A-I      intronic
chr16:20750626(-) A-I      intronic
chr16:20750779(-) A-I      intronic
chr16:20750570(-) A-I      intronic
chr16:20750532(-) A-I      intronic
chr16:20750686(-) A-I      intronic
chr16:20750772(-) A-I      intronic
chr16:20750652(-) A-I      intronic
chr16:20751467(-) A-I      intronic
chr16:20750662(-) A-I      intronic
chr16:20751060(-) A-I      intronic
chr16:20750571(-) A-I      intronic
chr16:20750900(-) A-I      intronic
chr16:20750692(-) A-I      intronic
chr16:20750635(-) A-I      intronic
chr16:20751606(-) A-I      intronic
chr16:20751590(-) A-I      intronic
chr16:20750691(-) A-I      intronic
chr16:20750765(-) A-I      intronic
chr16:20750880(-) A-I      intronic
chr16:20752462(-) A-I      intronic
chr16:20751031(-) A-I      intronic
chr16:20750716(-) A-I      intronic
chr16:20751573(-) A-I      intronic
chr16:20750995(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED THUMPD1
chr16:20750565(-) A-G intron -    22484847
chr16:20750635(-) A-G intron -    22484847
chr16:20750691(-) A-G intron -    22484847
chr16:20751031(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase THUMPD1
chr16:20745520-20745521(-) m6A 3'UTR       24981863//22608085
chr16:20745569-20745570(-) m6A 3'UTR       24284625//24981863//22608085
chr16:20745577-20745578(-) m6A 3'UTR       24284625//24981863//22608085
chr16:20745604-20745605(-) m6A 3'UTR       24284625//24209618//24981863//22608085
chr16:20745616-20745617(-) m6A 3'UTR       24284625//24209618//24981863//22608085
chr16:20745754-20745755(-) m6A 3'UTR       -
chr16:20745792-20745793(-) m6A 3'UTR       -
chr16:20745797-20745798(-) m6A 3'UTR       -
chr16:20745845-20745846(-) m6A 3'UTR       -
chr16:20745932-20745933(-) m6A 3'UTR       27773535
chr16:20746008-20746009(-) m6A 3'UTR       27773535
chr16:20746024-20746025(-) m6A 3'UTR       27773535
chr16:20746173-20746174(-) m6A 3'UTR       24209618//24981863//27773535//22608085
chr16:20746229-20746230(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085
chr16:20746287-20746288(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:20746295-20746296(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:20746402-20746403(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:20746422-20746423(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:20746472-20746473(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:20746480-20746481(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:20746563-20746564(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:20746644-20746645(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr16:20746662-20746663(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr16:20746677-20746678(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr16:20746683-20746684(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr16:20746689-20746690(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr16:20746698-20746699(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr16:20746733-20746734(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr16:20746753-20746754(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr16:20746791-20746792(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr16:20746974-20746975(-) m6A 3'UTR       24284625//27773535//22608085
chr16:20747003-20747004(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr16:20747179-20747180(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr16:20747268-20747269(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr16:20747337-20747338(-) m6A 3'UTR       24284625//24981863//27773535//22575960//22608085
chr16:20747347-20747348(-) m6A 3'UTR       24284625//24981863//27773535//22575960//22608085
chr16:20747419-20747420(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr16:20747476-20747477(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr16:20747531-20747532(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr16:20747576-20747577(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085
chr16:20747604-20747605(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085
chr16:20747611-20747612(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085
chr16:20747628-20747629(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085
chr16:20747997-20747998(-) m6A 3'UTR//intron       24981863
chr16:20748116-20748117(-) m6A 3'UTR//intron       24981863//22608085
chr16:20748255-20748256(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr16:20748261-20748262(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr16:20748303-20748304(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085
chr16:20748308-20748309(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085
chr16:20748370-20748371(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085
chr16:20748376-20748377(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085
chr16:20748385-20748386(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085
chr16:20748399-20748400(-) m6A CDS//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22608085
chr16:20749101-20749102(-) m6A 3'UTR//CDS//exon       24981863//27773535//22608085
chr16:20749109-20749110(-) m6A 3'UTR//CDS//exon       24981863//27773535//22608085
chr16:20749129-20749130(-) m6A 3'UTR//CDS//exon       24981863//27773535//22608085
chr16:20749140-20749141(-) m6A 3'UTR//CDS//exon       24981863//27773535//22608085
chr16:20749218-20749219(-) m6A 3'UTR//CDS//exon       24209618//27773535//22608085
chr16:20749233-20749234(-) m6A 3'UTR//CDS//exon       24209618//27773535//22608085
chr16:20750385-20750386(-) m6A CDS//exon       27773535
chr16:20753039-20753040(-) m6A CDS//exon       24981863//27371828
chr16:20753205-20753206(-) m6A 5'UTR       24981863
chr16:20753217-20753218(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate THUMPD1
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: bkv-miR-B1-5p
Interactor2: THUMPD1

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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