Basic Information:

  VIRBase ID:  

VHID00661147

  Virus:  

Human polyomavirus 1 (BKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      bkv-miR-B1-5p:  MIMAT0009149          PHF19:  NR_104601     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	bkv-miR-B1-5p	PHF19
miRBase Accession/Entrez ID	MIMAT0009149	26147
Organism	Human polyomavirus 1 (BKV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	MTF2L1//PCL3//TDRD19B

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PHF19	chr9:123634194(-) A-I      intronic chr9:123633384(-) A-I      intronic chr9:123634136(-) A-I      intronic chr9:123635101(-) A-I      intronic chr9:123633408(-) A-I      intronic chr9:123633345(-) A-I      intronic chr9:123633277(-) A-I      intronic chr9:123635024(-) A-I      intronic chr9:123634960(-) A-I      intronic chr9:123633292(-) A-I      intronic chr9:123633278(-) A-I      intronic chr9:123633249(-) A-I      intronic chr9:123635016(-) A-I      intronic chr9:123633309(-) A-I      intronic chr9:123633319(-) A-I      intronic chr9:123633350(-) A-I      intronic chr9:123633377(-) A-I      intronic chr9:123633382(-) A-I      intronic chr9:123634957(-) A-I      intronic chr9:123635179(-) A-I      intronic chr9:123633348(-) A-I      intronic chr9:123635036(-) A-I      intronic chr9:123633453(-) A-I      intronic chr9:123634971(-) A-I      intronic chr9:123633445(-) A-I      intronic chr9:123633318(-) A-I      intronic chr9:123634131(-) A-I      intronic chr9:123633207(-) A-I      intronic chr9:123633427(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	PHF19	chr9:123633348(-) A-G intron -    22484847 chr9:123633359(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PHF19	chr9:123618520-123618521(-) m6A 3'UTR       - chr9:123618551-123618552(-) m6A 3'UTR       - chr9:123619261-123619262(-) m6A 3'UTR       27773535 chr9:123619327-123619328(-) m6A 3'UTR       27773535 chr9:123619341-123619342(-) m6A 3'UTR       27773535 chr9:123619350-123619351(-) m6A 3'UTR       27773535 chr9:123619378-123619379(-) m6A 3'UTR       27773535 chr9:123619393-123619394(-) m6A 3'UTR       - chr9:123619435-123619436(-) m6A 3'UTR       - chr9:123619970-123619971(-) m6A 3'UTR       24284625 chr9:123620118-123620119(-) m6A 3'UTR       24284625//25456834//28052920//27371828 chr9:123620189-123620190(-) m6A 3'UTR       24284625//24209618//25456834//28052920//27773535//27371828 chr9:123620235-123620236(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828 chr9:123620462-123620463(-) m6A CDS//exon       24284625//24981863//27371828//22575960 chr9:123620559-123620560(-) m6A CDS//exon       24284625//27371828 chr9:123624910-123624911(-) m6A CDS//exon       24981863//27371828 chr9:123624927-123624928(-) m6A CDS//exon       24981863//27371828 chr9:123625062-123625063(-) m6A exon//intron       24284625//27371828 chr9:123625070-123625071(-) m6A exon//intron       24284625//27371828 chr9:123625148-123625149(-) m6A exon//intron       27371828 chr9:123625191-123625192(-) m6A exon//intron       27371828 chr9:123625256-123625257(-) m6A exon//intron       27371828 chr9:123625280-123625281(-) m6A exon//intron       27371828 chr9:123626341-123626342(-) m6A CDS//exon       - chr9:123626364-123626365(-) m6A CDS//exon       - chr9:123636844-123636845(-) Am CDS       - chr9:123636902-123636903(-) m6A CDS       22575960 chr9:123636915-123636916(-) m6A CDS       22575960 chr9:123636927-123636928(-) m6A CDS       22575960 chr9:123636984-123636985(-) m6A CDS       27371828//22575960 chr9:123636991-123636992(-) m6A CDS       27371828//22575960 chr9:123638169-123638170(-) m6A 5'UTR//intron       27371828//27773536//22575960 chr9:123638234-123638235(-) m6A 5'UTR//intron       24284625//27371828 chr9:123638283-123638284(-) m6A 5'UTR//intron       24284625//24981863//26404942 chr9:123638298-123638299(-) m6A 5'UTR//intron       24284625//24981863//26404942 chr9:123638309-123638310(-) m6A 5'UTR//intron       24981863 chr9:123638358-123638359(-) m6A 5'UTR//intron       - chr9:123638433-123638434(-) m6A 5'UTR//intron       27371828 chr9:123638537-123638538(-) m6A 5'UTR//intron       27371828 chr9:123638549-123638550(-) m6A 5'UTR//intron       27371828 chr9:123638587-123638588(-) m6A 5'UTR//intron       27371828 chr9:123638630-123638631(-) m6A 5'UTR//intron       27371828 chr9:123639285-123639286(-) m6A 5'UTR//intron       24981863 chr9:123639382-123639383(-) m6A 5'UTR//intron       24981863 chr9:123639390-123639391(-) m6A 5'UTR//intron       24981863 chr9:123639402-123639403(-) m6A 5'UTR//intron       24981863 chr9:123639467-123639468(-) m6A 5'UTR//intron       24209618//24981863 chr9:123639492-123639493(-) m6A 5'UTR//intron       24209618//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PHF19	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Exosome Blood     - Insoluble cytoplasm K562 cells     - Membrane HCC cell line (HepG2)|K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: bkv-miR-B1-5p
Interactor2: PHF19

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg