Basic Information:

  VIRBase ID:  

VHID00661028

  Virus:  

Human polyomavirus 1 (BKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      bkv-miR-B1-5p:  MIMAT0009149          TTC33:  NM_012382     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	bkv-miR-B1-5p	TTC33
miRBase Accession/Entrez ID	MIMAT0009149	23548
Organism	Human polyomavirus 1 (BKV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	OSRF

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TTC33	chr5:40745952(-) A-I      intronic chr5:40743775(-) A-I      intronic chr5:40743753(-) A-I      intronic chr5:40732936(-) A-I      intronic chr5:40732849(-) A-I      intronic chr5:40732816(-) A-I      intronic chr5:40728334(-) A-I      intronic chr5:40745953(-) A-I      intronic chr5:40728324(-) A-I      intronic chr5:40728140(-) A-I      intronic chr5:40722303(-) A-I      intronic chr5:40725142(-) A-I      intronic chr5:40725150(-) A-I      intronic chr5:40718794(-) A-I      intronic chr5:40718793(-) A-I      intronic chr5:40718679(-) A-I      intronic chr5:40717209(-) A-I      intronic chr5:40745981(-) A-I      intronic chr5:40749146(-) A-I      intronic chr5:40726159(-) A-I      intronic chr5:40725302(-) A-I      intronic chr5:40743800(-) A-I      intronic chr5:40725370(-) A-I      intronic chr5:40737194(-) A-I      intronic chr5:40725087(-) A-I      intronic chr5:40751996(-) A-I      intronic chr5:40728340(-) A-I      intronic chr5:40725051(-) A-I      intronic chr5:40748162(-) A-I      intronic chr5:40725131(-) A-I      intronic chr5:40725222(-) A-I      intronic chr5:40749141(-) A-I      intronic chr5:40743709(-) A-I      intronic chr5:40728166(-) A-I      intronic chr5:40743707(-) A-I      intronic chr5:40725153(-) A-I      intronic chr5:40725113(-) A-I      intronic chr5:40728196(-) A-I      intronic chr5:40725316(-) A-I      intronic chr5:40748095(-) A-I      intronic chr5:40745733(-) A-I      intronic chr5:40725177(-) A-I      intronic chr5:40728139(-) A-I      intronic chr5:40728323(-) A-I      intronic chr5:40728264(-) A-I      intronic chr5:40725152(-) A-I      intronic chr5:40725117(-) A-I      intronic chr5:40725182(-) A-I      intronic chr5:40742028(-) A-I      intronic chr5:40725356(-) A-I      intronic chr5:40726160(-) A-I      intronic chr5:40728227(-) A-I      intronic chr5:40728127(-) A-I      intronic chr5:40743712(-) A-I      intronic chr5:40728201(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TTC33	chr5:40728196(-) A-G intron -    22484847 chr5:40728227(-) A-G intron -    22484847 chr5:40728323(-) A-G intron -    22484847 chr5:40748095(-) A-G intron -    22484847 chr5:40748162(-) A-G intron -    22484847 chr5:40748436(-) A-G intron -    22484847 chr5:40749141(-) A-G intron -    22484847 chr5:40751930(-) T-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TTC33	chr5:40716111-40716112(-) m6A 3'UTR//exon       26404942//27773535 chr5:40716181-40716182(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085 chr5:40716311-40716312(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22608085 chr5:40716347-40716348(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//27371828//22608085 chr5:40716365-40716366(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085 chr5:40716427-40716428(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22608085 chr5:40716535-40716536(-) m6A CDS//exon       24209618//24981863//27773535//22608085 chr5:40716556-40716557(-) m6A CDS//exon       24209618//24981863//27773535//22608085 chr5:40728487-40728488(-) m6A CDS//exon//intron       27773535 chr5:40746940-40746941(-) m6A CDS//exon       24981863//27773535 chr5:40747004-40747005(-) m6A CDS//exon       24981863//27773535 chr5:40755946-40755947(-) m6A 5'UTR//exon       24981863//27773535//27371828 chr5:40755962-40755963(-) m6A 5'UTR//exon       24981863//27773535//27371828 chr5:40755990-40755991(-) m6A 5'UTR//exon       25456834//24981863//27773535//27371828 chr5:40756023-40756024(-) m6A 5'UTR//exon       25456834//24981863//27773535//27371828

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TTC33	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: bkv-miR-B1-5p
Interactor2: TTC33

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA
Support Database	RepTar//VmiReg