Detail Information

Basic Information:


  VIRBase ID:  

VHID00659739

  Virus:  

Human polyomavirus 1 (BKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      bkv-miR-B1-5p:           RFXAP:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol bkv-miR-B1-5p RFXAP
miRBase
Accession/Entrez ID
MIMAT0009149 5994
Organism Human polyomavirus 1 (BKV) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RFXAP
chr13:37402482(+) A-I      3'UTR
chr13:37402475(+) A-I      3'UTR
chr13:37402490(+) A-I      3'UTR
chr13:37402483(+) A-I      3'UTR
chr13:37395543(+) A-I      intronic
chr13:37395764(+) A-I      intronic
chr13:37396364(+) A-I      intronic
chr13:37400105(+) A-I      intronic
chr13:37396345(+) A-I      intronic
chr13:37396302(+) A-I      intronic
chr13:37396245(+) A-I      intronic
chr13:37395616(+) A-I      intronic
chr13:37395565(+) A-I      intronic
chr13:37396822(+) A-I      intronic
chr13:37396369(+) A-I      intronic
chr13:37395744(+) A-I      intronic
chr13:37400346(+) A-I      intronic
chr13:37396305(+) A-I      intronic
chr13:37395252(+) A-I      intronic
chr13:37395689(+) A-I      intronic
chr13:37395724(+) A-I      intronic
chr13:37395536(+) A-I      intronic
chr13:37395368(+) A-I      intronic
chr13:37395740(+) A-I      intronic
chr13:37396357(+) A-I      intronic
chr13:37395653(+) A-I      intronic
chr13:37395259(+) A-I      intronic
chr13:37395217(+) A-I      intronic
chr13:37395542(+) A-I      intronic
chr13:37396257(+) A-I      intronic
chr13:37396308(+) A-I      intronic
chr13:37400189(+) A-I      intronic
chr13:37395294(+) A-I      intronic
chr13:37395208(+) A-I      intronic
chr13:37395669(+) A-I      intronic
chr13:37395274(+) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RFXAP
chr13:37393765-37393766(+) m6A CDS       24284625//24209618//25456834//24981863//22608085
chr13:37393774-37393775(+) m6A CDS       24284625//24209618//25456834//24981863//22608085
chr13:37393783-37393784(+) m6A CDS       24284625//25456834//24981863//22608085
chr13:37393839-37393840(+) m6A CDS       24284625//25456834//24981863//22608085
chr13:37393911-37393912(+) m6A CDS       24284625//24209618//25456834//24981863//22608085
chr13:37393938-37393939(+) m6A CDS       24284625//24209618//25456834//24981863//22608085
chr13:37393967-37393968(+) m6A CDS       24284625//24209618//25456834//24981863//22608085
chr13:37393985-37393986(+) m6A CDS       24284625//24209618//25456834//24981863//22608085
chr13:37394008-37394009(+) m6A CDS       24284625//24209618//25456834//24981863//22608085
chr13:37394025-37394026(+) m1A CDS       26863196
chr13:37394044-37394045(+) m6A CDS       24284625//24209618//25456834//24981863//22608085
chr13:37394055-37394056(+) m6A CDS       24284625//24209618//25456834//24981863//22608085
chr13:37394087-37394088(+) m6A CDS       24284625//24209618//25456834//24981863//22608085
chr13:37399596-37399597(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22608085
chr13:37399603-37399604(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22608085
chr13:37399632-37399633(+) m6A CDS//exon       24284625//24209618//24981863//22608085
chr13:37399647-37399648(+) m6A CDS//exon       24284625//24209618//24981863//22608085
chr13:37399668-37399669(+) m6A CDS//exon       24284625//24981863//22608085
chr13:37401820-37401821(+) m6A CDS//exon       24284625//24981863//22608085
chr13:37401859-37401860(+) m6A CDS//exon       24284625//24981863//22608085
chr13:37401878-37401879(+) m6A CDS//exon       24284625//24981863//22608085
chr13:37401894-37401895(+) m6A 3'UTR//intron       24981863//22608085
chr13:37401905-37401906(+) m6A 3'UTR//intron       24981863//22608085
chr13:37401959-37401960(+) m6A 3'UTR//intron       22608085
chr13:37401991-37401992(+) m6A 3'UTR//intron       22608085
chr13:37401997-37401998(+) m6A 3'UTR//intron       22608085
chr13:37402568-37402569(+) Y 3'UTR//intron       26075521

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate RFXAP
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: bkv-miR-B1-5p
Interactor2: RFXAP

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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