Basic Information:

  VIRBase ID:  

VHID00658920

  Virus:  

Human polyomavirus 1 (BKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      bkv-miR-B1-5p:  MIMAT0009149          COL1A1:  NM_000088     

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Interactor Information:

	Interactor1	Interactor2
Symbol	bkv-miR-B1-5p	COL1A1
miRBase Accession/Entrez ID	MIMAT0009149	1277
Organism	Human polyomavirus 1 (BKV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CAFYD//EDSARTH1//EDSC//OI1//OI2//OI3//OI4

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	COL1A1	chr17:48274934(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	COL1A1	chr17:48261683-48261684(-) m6A 3'UTR       24209618 chr17:48261825-48261826(-) m6A 3'UTR       24209618 chr17:48262074-48262075(-) m6A 3'UTR       24209618 chr17:48262110-48262111(-) m6A 3'UTR       24209618//25456834 chr17:48262167-48262168(-) m6A 3'UTR       24284625//24209618//25456834 chr17:48262309-48262310(-) m6A 3'UTR       24284625//24209618//25456834//24981863 chr17:48262324-48262325(-) m6A 3'UTR       24209618//25456834//24981863 chr17:48262387-48262388(-) m6A 3'UTR       24209618//25456834//24981863//27773535 chr17:48262427-48262428(-) m6A 3'UTR       24209618//24981863//27773535 chr17:48262436-48262437(-) m6A 3'UTR       24209618//24981863//27773535 chr17:48262522-48262523(-) m6A 3'UTR       24209618//24981863//27773535 chr17:48262566-48262567(-) m6A 3'UTR       24209618//24981863 chr17:48262660-48262661(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535 chr17:48262672-48262673(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535 chr17:48262699-48262700(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535 chr17:48262739-48262740(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr17:48262753-48262754(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr17:48262780-48262781(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535 chr17:48262785-48262786(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535 chr17:48262802-48262803(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535 chr17:48262861-48262862(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535 chr17:48262905-48262906(-) m6A CDS       24284625//24209618//27773535 chr17:48262957-48262958(-) m6A CDS       24284625//24209618//27773535 chr17:48262966-48262967(-) m6A CDS       24284625//24209618//27773535 chr17:48262984-48262985(-) m6A CDS       24284625//24209618//27773535 chr17:48263245-48263246(-) m6A CDS//exon       24284625 chr17:48263253-48263254(-) m6A CDS//exon       24284625 chr17:48263271-48263272(-) m6A CDS//exon       24284625 chr17:48263292-48263293(-) m6A CDS//exon       24284625 chr17:48263723-48263724(-) m6A CDS//exon       27773535 chr17:48263732-48263733(-) m6A CDS//exon       27773535 chr17:48263750-48263751(-) m6A CDS//exon       27773535 chr17:48263790-48263791(-) m6A CDS//exon       27773535 chr17:48263799-48263800(-) m6A CDS//exon       27773535 chr17:48264053-48264054(-) m6A CDS//exon       24981863 chr17:48264083-48264084(-) m6A CDS//exon       24981863 chr17:48264093-48264094(-) Cm CDS//exon       - chr17:48264119-48264120(-) m6A CDS//exon       - chr17:48270030-48270031(-) m6A CDS//exon       24284625 chr17:48270172-48270173(-) m6A CDS//exon       24284625 chr17:48270369-48270370(-) m6A CDS//exon       24284625 chr17:48270938-48270939(-) m6A exon//intron       24284625 chr17:48274579-48274580(-) m6A CDS//exon       27773536 chr17:48276604-48276605(-) m6A CDS       27773536 chr17:48276613-48276614(-) m6A CDS       27773536 chr17:48276622-48276623(-) m6A CDS       27773536 chr17:48276631-48276632(-) m6A CDS       27773536 chr17:48276640-48276641(-) m6A CDS//exon       27773536 chr17:48276649-48276650(-) m6A CDS//exon       27773536 chr17:48276685-48276686(-) m6A CDS//exon       24284625//27773536 chr17:48276800-48276801(-) m6A CDS//exon       24284625//27773536 chr17:48276811-48276812(-) m6A CDS//exon       24284625//27773536 chr17:48276930-48276931(-) m6A CDS//exon       27773536 chr17:48277172-48277173(-) m6A CDS//exon       - chr17:48277179-48277180(-) m6A CDS//exon       - chr17:48277249-48277250(-) m6A CDS//exon       - chr17:48277520-48277521(-) m6A 5'UTR//intron       24284625//24981863 chr17:48277547-48277548(-) m6A 5'UTR//intron       24284625//24981863 chr17:48278773-48278774(-) m6A CDS//exon       24284625//24981863 chr17:48278857-48278858(-) m6A CDS//exon       24981863 chr17:48278875-48278876(-) m6A 5'UTR//exon       25456834//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	COL1A1	Exosome Blood     - Interior speckle WI-38 cells     29133588 Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: bkv-miR-B1-5p
Interactor2: COL1A1

Evidence Support:

Prediction-Evidence	cRep//miRanda//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg