Detail

Detail Information

Basic Information:

VIRBase ID:

VHID00656153

Virus:

Suid alphaherpesvirus 1 (Pseudorabies virus JS-2012 strain)

Host:

Sus scrofa

Confidence Score:

0.5908

Interaction Type:

Virus-Host interaction

Interactor Information:

	Interactor1	Interactor2
Symbol	prv-miR-1-5p	SFT2D1
miRBase Accession/Entrez ID	prv-miR-1-5p	100513321
Organism	Suid alphaherpesvirus 1 (Pseudorabies virus JS-2012 strain)	Sus scrofa
Category	miRNA	mRNA
Alias	-	-

RNA Modification:

Resource

Symbol

ModificationPosition

Type

Genomic Context

PMID

RMBase

SFT2D1

chr1:3716427-3716428(+)	m6A	5'UTR	28267806
chr1:3716433-3716434(+)	m6A	5'UTR	28267806

Interaction Network (The top 100 interactions):

Interactor1: prv-miR-1-5p

Interactor2: SFT2D1

Evidence Support:

Weak-Evidence	Small RNA sequencing
Prediction-Evidence	miRanda//RNAHybrid
Support Database	ViRBase

References:

PMID	26998839	Target region	3'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	PK15 cells	Interactor2 expression	None
Description	A total of 36 miRNAs, including 11 known miRNAs and 25 novel miRNAs, were mapped to the PRV JS-2012 genome. We used RNAhybrid and miRanda software to scan the potential viral gene targets for these miRNAs. We scanned the 3'UTRs of PRV-encoded genes, including the LLT and found that each gene can be targeted by one or more miRNAs.

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