Basic Information:

  VIRBase ID:  

VHID00654384

  Virus:  

Suid alphaherpesvirus 1 (Pseudorabies virus JS-2012 strain)

  Host:  

Sus scrofa

  Confidence Score:  

0.5908

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      prv-miR-LLT11b-3p:  MIMAT0037463          IL1B:  NM_214055     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	prv-miR-LLT11b-3p	IL1B
miRBase Accession/Entrez ID	MIMAT0037463	397122
Organism	Suid alphaherpesvirus 1 (Pseudorabies virus JS-2012 strain)	Sus scrofa
Category	miRNA	mRNA
Alias	-	IL1B1

Interaction Network (The top 100 interactions):

Interactor1: prv-miR-LLT11b-3p
Interactor2: IL1B

Evidence Support:

Weak-Evidence	Small RNA sequencing
Prediction-Evidence	miRanda//RNAHybrid
Support Database	ViRBase

References:

PMID	26998839	Target region	3'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	PK15 cells	Interactor2 expression	None
Description	A total of 36 miRNAs, including 11 known miRNAs and 25 novel miRNAs, were mapped to the PRV JS-2012 genome. We used RNAhybrid and miRanda software to scan the potential viral gene targets for these miRNAs. We scanned the 3'UTRs of PRV-encoded genes, including the LLT and found that each gene can be targeted by one or more miRNAs.