Basic Information:

  VIRBase ID:  

VHID00648830

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-9:  MIMAT0001573          Clspn:  NM_175554     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mghv-miR-M1-9	Clspn
miRBase Accession/Entrez ID	MIMAT0001573	269582
Organism	Murid gammaherpesvirus 4 (MuHV-4)	Mus musculus
Category	miRNA	mRNA
Alias	-	B130025E01//C85083//E130314M08Rik

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Clspn	chr4:126557014-126557015(+) m6A 5'UTR//exon       25683224//25569111 chr4:126557073-126557074(+) m6A 5'UTR//exon       25683224//25569111 chr4:126559233-126559234(+) m6A CDS//exon       25683224 chr4:126559256-126559257(+) m6A CDS//exon       25683224//25412662 chr4:126559268-126559269(+) m6A CDS//exon       25683224//25412662 chr4:126559275-126559276(+) m6A CDS//exon       25683224//25412662//25569111 chr4:126559291-126559292(+) m6A CDS//exon       25683224//25412662//25569111 chr4:126559949-126559950(+) m6A CDS//exon       25683224//25412662//24981863//25569111 chr4:126559975-126559976(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111 chr4:126559996-126559997(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111 chr4:126560018-126560019(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111 chr4:126560044-126560045(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111 chr4:126560056-126560057(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111 chr4:126560133-126560134(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111 chr4:126560157-126560158(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111 chr4:126560193-126560194(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111 chr4:126560198-126560199(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111 chr4:126560209-126560210(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111 chr4:126560238-126560239(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111 chr4:126560304-126560305(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111 chr4:126560324-126560325(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111 chr4:126560340-126560341(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111 chr4:126561770-126561771(+) m6A CDS//exon       25683224//25412662//24981863 chr4:126561823-126561824(+) m6A CDS//exon       25683224//24981863 chr4:126561899-126561900(+) m6A CDS//exon       25683224//24981863 chr4:126561996-126561997(+) m6A exon//intron       25683224//24981863 chr4:126563914-126563915(+) m6A CDS       24981863 chr4:126564973-126564974(+) m6A CDS       24981863 chr4:126564986-126564987(+) m6A CDS       24981863 chr4:126565730-126565731(+) m6A CDS       24981863 chr4:126566004-126566005(+) m6A CDS       25683224//25456834//24981863//25569111 chr4:126566011-126566012(+) m6A CDS       25683224//25456834//24981863//25569111 chr4:126566044-126566045(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr4:126566070-126566071(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr4:126566094-126566095(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr4:126566199-126566200(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr4:126566222-126566223(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr4:126566239-126566240(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr4:126566284-126566285(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr4:126566308-126566309(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr4:126566348-126566349(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr4:126566355-126566356(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr4:126566367-126566368(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr4:126566393-126566394(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr4:126566400-126566401(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr4:126566482-126566483(+) m6A CDS       25683224//25456834//24981863//25569111 chr4:126566492-126566493(+) m6A CDS       25683224//25456834//24981863//25569111 chr4:126566564-126566565(+) m6A CDS       25683224//25456834//24981863//25569111 chr4:126566571-126566572(+) m6A CDS       25683224//25456834//24981863//25569111 chr4:126572359-126572360(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr4:126572374-126572375(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr4:126573142-126573143(+) m6A CDS//exon       25683224//25456834//25412662//24981863 chr4:126573181-126573182(+) m6A CDS//exon       25683224//25412662//24981863 chr4:126573336-126573337(+) m6A CDS//exon//intron       24981863//25456834 chr4:126574676-126574677(+) m6A CDS//exon       24981863//25456834 chr4:126574694-126574695(+) m6A CDS//exon       24981863//25456834 chr4:126574713-126574714(+) m6A CDS//exon       24981863 chr4:126576352-126576353(+) m6A CDS       25683224 chr4:126577735-126577736(+) m6A CDS       25683224//25412662//24981863//25569111 chr4:126577794-126577795(+) m6A CDS       25683224//25412662//24981863 chr4:126577804-126577805(+) m6A CDS       25683224//25412662//24981863 chr4:126578430-126578431(+) m6A CDS       25683224//25412662//24981863 chr4:126580991-126580992(+) m6A CDS       25683224//25412662//24981863 chr4:126581322-126581323(+) m6A exon//intron       25683224//25412662//24981863 chr4:126581341-126581342(+) m6A exon//intron       25683224//25412662//24981863 chr4:126581436-126581437(+) m6A CDS//exon       25683224//25412662//24981863 chr4:126581471-126581472(+) m6A CDS//exon       25683224//25412662//24981863 chr4:126585840-126585841(+) m6A CDS//exon       25683224//25412662//24981863 chr4:126586108-126586109(+) m6A CDS//exon       25683224//25412662//24981863 chr4:126586198-126586199(+) m6A CDS//exon       25683224//25412662//24981863 chr4:126586218-126586219(+) m6A CDS//exon       25683224//25412662//24981863 chr4:126587590-126587591(+) m6A CDS//exon       25683224//25412662//24981863 chr4:126587615-126587616(+) m6A CDS//exon       25683224//25412662//24981863 chr4:126587628-126587629(+) m6A CDS//exon       25683224//25412662//24981863 chr4:126587681-126587682(+) m6A CDS//exon       25683224//25412662//24981863 chr4:126590573-126590574(+) m6A CDS//intron       25683224//25412662//24981863 chr4:126591228-126591229(+) m6A CDS//exon       25683224 chr4:126591239-126591240(+) m6A CDS//exon       25683224 chr4:126591247-126591248(+) m6A CDS       25683224 chr4:126591600-126591601(+) m6A CDS       25683224 chr4:126591616-126591617(+) m6A CDS       25683224 chr4:126591641-126591642(+) m6A CDS       25683224 chr4:126591682-126591683(+) m6A CDS       25683224 chr4:126591691-126591692(+) m6A CDS       25683224 chr4:126591739-126591740(+) m6A CDS       25683224//25412662//25569111 chr4:126592665-126592666(+) m6A CDS       25683224//25412662//25569111 chr4:126592705-126592706(+) m6A CDS       25683224//25412662//25569111 chr4:126593236-126593237(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr4:126593284-126593285(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr4:126593344-126593345(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr4:126593398-126593399(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr4:126593456-126593457(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr4:126593491-126593492(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr4:126593523-126593524(+) m6A 3'UTR       25683224//25456834//24981863 chr4:126593556-126593557(+) m6A 3'UTR       25683224//24981863//25456834 chr4:126593608-126593609(+) m6A 3'UTR       25683224//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Clspn	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mghv-miR-M1-9
Interactor2: Clspn

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar