Basic Information:

  VIRBase ID:  

VHID00648824

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-9:  MIMAT0001573          Setx:  NM_198033     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mghv-miR-M1-9	Setx
miRBase Accession/Entrez ID	MIMAT0001573	269254
Organism	Murid gammaherpesvirus 4 (MuHV-4)	Mus musculus
Category	miRNA	mRNA
Alias	-	A//A130090N03//A930037J23Rik//Als4//AOA2//AW060766//mKIAA0625//SCAR1//Sen1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	Setx	chr2:29032279(+) A-I      intronic chr2:29032214(+) A-I      intronic chr2:28988050(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	Setx	chr2:29176694(+) A-I intron -    22524474 chr2:29176759(+) A-I intron -    22524474

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Setx	chr2:29125246-29125247(+) m6A 5'UTR//intron       25412662 chr2:29125324-29125325(+) m6A 5'UTR//intron       25412662 chr2:29125516-29125517(+) m6A 5'UTR//intron       25683224//22608085 chr2:29130273-29130274(+) m6A CDS//exon       24981863 chr2:29130289-29130290(+) m6A CDS//exon       24981863 chr2:29144048-29144049(+) m6A CDS       22608085 chr2:29144189-29144190(+) m6A CDS       - chr2:29144645-29144646(+) m6A CDS       24981863 chr2:29144665-29144666(+) m6A CDS       24981863 chr2:29144842-29144843(+) m6A CDS       24981863 chr2:29145160-29145161(+) m6A CDS       24981863//25569111//22608085 chr2:29145244-29145245(+) m6A CDS       24981863//25569111//22608085 chr2:29145270-29145271(+) m6A CDS       24981863//25569111//22608085 chr2:29145284-29145285(+) m6A CDS       24981863//25569111//22608085 chr2:29145343-29145344(+) m6A CDS       24981863//25569111//22608085 chr2:29145380-29145381(+) m6A CDS       24981863//25569111 chr2:29145398-29145399(+) m6A CDS       24981863//25569111 chr2:29145500-29145501(+) m6A CDS       25412662 chr2:29145762-29145763(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr2:29145817-29145818(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr2:29145825-29145826(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr2:29145959-29145960(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:29145970-29145971(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:29146005-29146006(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:29146022-29146023(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:29146064-29146065(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:29146130-29146131(+) m6A CDS       25456834//25412662//24981863//25569111//22608085 chr2:29146299-29146300(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr2:29146349-29146350(+) m6A CDS       25683224//24981863//25569111 chr2:29146378-29146379(+) m6A CDS       25683224//24981863//25569111 chr2:29146413-29146414(+) m6A CDS       24981863//25412662//25569111//22608085 chr2:29146469-29146470(+) m6A CDS       25456834//25412662//24981863//25569111//22608085 chr2:29146491-29146492(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:29146565-29146566(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:29146572-29146573(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:29146598-29146599(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:29146688-29146689(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr2:29146760-29146761(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr2:29146769-29146770(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr2:29146785-29146786(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr2:29146823-29146824(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:29146871-29146872(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:29146902-29146903(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:29146939-29146940(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:29146953-29146954(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:29147020-29147021(+) m6A CDS       25683224//25412662//24981863//25569111 chr2:29147075-29147076(+) m6A CDS       25683224//25412662//24981863//25569111 chr2:29147149-29147150(+) m6A CDS       25683224//25412662//24981863//25569111 chr2:29147160-29147161(+) m6A CDS       25683224//25412662//24981863//25569111//22608085 chr2:29147200-29147201(+) m6A CDS       25683224//25412662//24981863//25569111//22608085 chr2:29147210-29147211(+) m6A CDS       25683224//25412662//24981863//25569111//22608085 chr2:29147223-29147224(+) m6A CDS       25683224//24981863//25569111//22608085 chr2:29147257-29147258(+) m6A CDS       25683224//24981863//25569111 chr2:29147325-29147326(+) m6A CDS       25683224//24981863//25569111 chr2:29147413-29147414(+) m6A CDS       25683224//24981863//25569111//22608085 chr2:29147464-29147465(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr2:29147555-29147556(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr2:29147627-29147628(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr2:29147685-29147686(+) m6A CDS       24981863//25456834//25569111//22608085 chr2:29147713-29147714(+) m6A CDS       24981863//25456834//25569111//22608085 chr2:29147771-29147772(+) m6A CDS       24981863//25569111//22608085 chr2:29147840-29147841(+) m6A CDS       24981863//25569111 chr2:29147922-29147923(+) Y CDS//exon       26075521 chr2:29148001-29148002(+) m6A CDS       24981863//25569111 chr2:29148101-29148102(+) m6A CDS       25683224//24981863//25569111//22608085 chr2:29148112-29148113(+) m6A CDS       25683224//24981863//25569111//22608085 chr2:29148122-29148123(+) m6A CDS       25683224//24981863//25569111//22608085 chr2:29148144-29148145(+) m6A CDS       25683224//24981863//25569111//22608085 chr2:29148186-29148187(+) m6A CDS       25683224//24981863//25569111//22608085 chr2:29148222-29148223(+) m6A CDS       25683224//24981863//25569111//22608085 chr2:29148265-29148266(+) m6A CDS       24981863//25569111//22608085 chr2:29148433-29148434(+) m6A CDS       24981863//25569111//22608085 chr2:29148453-29148454(+) m6A CDS       24981863//25569111//22608085 chr2:29148482-29148483(+) m6A CDS       24981863//25569111//22608085 chr2:29148590-29148591(+) m6A CDS       24981863 chr2:29148639-29148640(+) m6A CDS       24981863 chr2:29148718-29148719(+) m6A CDS       24981863 chr2:29173604-29173605(+) m6A CDS       25569111 chr2:29174359-29174360(+) m6A CDS//intron       25683224//24981863//25569111 chr2:29176890-29176891(+) m6A CDS       25456834//25569111 chr2:29176923-29176924(+) m6A CDS       25456834//25569111 chr2:29177583-29177584(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr2:29177593-29177594(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr2:29179403-29179404(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr2:29179419-29179420(+) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr2:29179459-29179460(+) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr2:29179472-29179473(+) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr2:29179479-29179480(+) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr2:29179503-29179504(+) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr2:29179566-29179567(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr2:29179593-29179594(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr2:29179598-29179599(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr2:29179605-29179606(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr2:29179671-29179672(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr2:29179694-29179695(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr2:29179747-29179748(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr2:29179838-29179839(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:29180001-29180002(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr2:29180075-29180076(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr2:29180112-29180113(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr2:29180142-29180143(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr2:29180351-29180352(+) m6A 3'UTR       25569111 chr2:29180380-29180381(+) m6A 3'UTR       25569111//22608085 chr2:29180423-29180424(+) m6A 3'UTR       25569111//22608085 chr2:29180470-29180471(+) m6A 3'UTR       25569111//22608085 chr2:29180501-29180502(+) m6A 3'UTR       25569111//22608085 chr2:29180571-29180572(+) m6A 3'UTR       25569111//22608085 chr2:29180969-29180970(+) m6A 3'UTR       22608085 chr2:29180999-29181000(+) m6A 3'UTR       22608085 chr2:29181037-29181038(+) m6A 3'UTR       25683224 chr2:29181092-29181093(+) m6A 3'UTR       25683224//22608085 chr2:29181102-29181103(+) m6A 3'UTR       25683224//22608085 chr2:29181153-29181154(+) m6A 3'UTR       25683224//22608085 chr2:29181794-29181795(+) m6A 3'UTR       25569111 chr2:29181896-29181897(+) m6A 3'UTR       24981863//25569111 chr2:29181943-29181944(+) m6A 3'UTR       24981863//25569111 chr2:29181986-29181987(+) m6A 3'UTR       24981863//25569111 chr2:29182151-29182152(+) Y 3'UTR//exon       26075521

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Setx	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mghv-miR-M1-9
Interactor2: Setx

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar