Detail Information

Basic Information:


  VIRBase ID:  

VHID00647351

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-9:           Syne1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mghv-miR-M1-9 Syne1
miRBase
Accession/Entrez ID		 MIMAT0001573 64009
Organism Murid gammaherpesvirus 4 (MuHV-4) Mus musculus
Category miRNA mRNA
Alias - 8B//A330049M09Rik//BE692247//C130039F11Rik//CPG2//enapt//KASH1//mKIAA1756//myne-1//Myne1//nes//SYNE

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR Syne1
chr10:5165211(+) A-I      intronic
chr10:5319214(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED Syne1
chr10:5181330(-) A-I intron -    22524474
chr10:5027327(-) A-I intron -    22524474

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Syne1
chr10:5020482-5020483(-) m6A 3'UTR       25683224//25569111
chr10:5020493-5020494(-) m6A 3'UTR       25683224//25569111
chr10:5020652-5020653(-) m6A 3'UTR       25683224//24981863//25569111//22608085
chr10:5020670-5020671(-) m6A 3'UTR       25683224//24981863//25569111//22608085
chr10:5020730-5020731(-) m6A 3'UTR       25683224//24981863//25569111//22608085
chr10:5020747-5020748(-) m6A 3'UTR       25683224//24981863//25569111//22608085
chr10:5020754-5020755(-) m6A 3'UTR       25683224//24981863//25569111//22608085
chr10:5020760-5020761(-) m6A 3'UTR       25683224//24981863//25569111//22608085
chr10:5020767-5020768(-) m6A 3'UTR       25683224//24981863//25569111//22608085
chr10:5020777-5020778(-) m6A 3'UTR       25683224//24981863//25569111//22608085
chr10:5020784-5020785(-) m6A 3'UTR       25683224//24981863//25569111//22608085
chr10:5020790-5020791(-) m6A 3'UTR       25683224//24981863//25569111//22608085
chr10:5020889-5020890(-) m6A 3'UTR       25683224//24981863//25569111//22608085
chr10:5020900-5020901(-) m6A 3'UTR       25683224//24981863//25569111//22608085
chr10:5020969-5020970(-) m6A 3'UTR       25683224//24981863//25569111//22608085
chr10:5021025-5021026(-) m6A 3'UTR       25683224//24981863//22608085
chr10:5021187-5021188(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085
chr10:5021228-5021229(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr10:5021267-5021268(-) m6A 3'UTR       25683224//25456834//24981863//25412662//25569111//22608085//22575960
chr10:5021302-5021303(-) m6A 3'UTR       25683224//25456834//24981863//25412662//25569111//22608085//22575960
chr10:5021412-5021413(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr10:5021418-5021419(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr10:5021458-5021459(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr10:5021480-5021481(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr10:5021528-5021529(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085
chr10:5021566-5021567(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085
chr10:5021667-5021668(-) m6A 3'UTR       25683224//24981863//25456834//25569111//22608085
chr10:5021705-5021706(-) m6A 3'UTR       25683224//24981863//25569111//22608085
chr10:5021711-5021712(-) m6A 3'UTR       25683224//24981863//25569111//22608085
chr10:5021740-5021741(-) m6A 3'UTR       25683224//24981863//25569111//22608085
chr10:5021871-5021872(-) m6A 3'UTR       24981863//25569111//22608085
chr10:5021888-5021889(-) m6A 3'UTR       24981863//25569111//22608085
chr10:5021996-5021997(-) m6A 3'UTR       24981863//25569111
chr10:5022088-5022089(-) m6A CDS       24981863//25569111
chr10:5022120-5022121(-) m6A CDS       24981863//25569111
chr10:5037255-5037256(-) m6A CDS       25683224//22608085
chr10:5037396-5037397(-) m6A CDS       25412662//22608085
chr10:5041536-5041537(-) m6A CDS       25683224//24981863//25412662//22608085
chr10:5043629-5043630(-) m6A CDS       25683224//24981863//22608085
chr10:5043635-5043636(-) m6A CDS       25683224//24981863//22608085
chr10:5043651-5043652(-) m6A CDS       25683224//24981863//22608085
chr10:5043675-5043676(-) m6A CDS       25683224//22608085
chr10:5043713-5043714(-) m6A CDS       25683224//22608085
chr10:5047568-5047569(-) m6A CDS       25683224//22608085
chr10:5047622-5047623(-) m6A CDS       24981863//22608085
chr10:5047646-5047647(-) m6A CDS       24981863//22608085
chr10:5047667-5047668(-) m6A CDS       24981863//22608085
chr10:5047778-5047779(-) m6A CDS       25683224//25412662//24981863//22608085
chr10:5047793-5047794(-) m6A CDS       25683224//25412662//24981863//22608085
chr10:5047811-5047812(-) m6A CDS       25683224//25412662//24981863//22608085
chr10:5047825-5047826(-) m6A CDS       25683224//25412662//24981863//22608085
chr10:5047832-5047833(-) m6A CDS       25683224//25412662//24981863//22608085
chr10:5048738-5048739(-) m6A CDS       25683224//25412662//24981863//22608085
chr10:5048801-5048802(-) m6A CDS       25683224//25412662//24981863//22608085
chr10:5048889-5048890(-) m6A CDS       25683224//22608085
chr10:5052749-5052750(-) m6A CDS       25412662//22608085
chr10:5052784-5052785(-) m6A CDS       25412662//22608085
chr10:5056467-5056468(-) m6A CDS       25683224//22608085
chr10:5057784-5057785(-) m6A CDS       25683224//22608085
chr10:5057812-5057813(-) m6A CDS       25683224//22608085
chr10:5057827-5057828(-) m6A CDS       25683224//22608085
chr10:5057943-5057944(-) m6A CDS       25683224//25412662//22608085
chr10:5057953-5057954(-) m6A CDS       25683224//25412662//22608085
chr10:5061403-5061404(-) m6A CDS       25683224//25412662//22608085
chr10:5061483-5061484(-) m6A CDS       25683224//25412662//22608085
chr10:5061500-5061501(-) m6A CDS       25683224//25412662//22608085
chr10:5061506-5061507(-) m6A CDS       25683224//25412662//22608085
chr10:5068827-5068828(-) m6A CDS       25683224//25412662//22608085
chr10:5068854-5068855(-) m6A CDS       25412662//22608085
chr10:5068881-5068882(-) m6A CDS       25412662//22608085
chr10:5338930-5338931(-) m6A 3'UTR       24981863//22608085
chr10:5338941-5338942(-) m6A 3'UTR       24981863//22608085
chr10:5339034-5339035(-) m6A 3'UTR       25456834//24981863//22608085
chr10:5339055-5339056(-) m6A 3'UTR       25456834//24981863//22608085
chr10:5343487-5343488(-) m6A CDS       24981863//22608085
chr10:5343515-5343516(-) m6A CDS       24981863//22608085
chr10:5351006-5351007(-) m6A CDS       24981863//22608085
chr10:5367601-5367602(-) m6A CDS       24981863//22608085
chr10:5368203-5368204(-) m6A CDS       24981863//22608085
chr10:5368249-5368250(-) m6A CDS       24981863//22608085
chr10:5541976-5541977(-) m6A CDS       22608085
chr10:5542016-5542017(-) m6A 5'UTR       22608085
chr10:5542044-5542045(-) m6A 5'UTR       25456834//22608085
chr10:5542090-5542091(-) m6A 5'UTR       24981863//22608085
chr10:5542110-5542111(-) m6A 5'UTR       24981863//22608085
chr10:5550580-5550581(-) m6A 5'UTR       24981863//25569111//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Syne1
Nucleus Neuroblastoma cell line (N2A)     22406755
Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):


Interactor1: mghv-miR-M1-9
Interactor2: Syne1

Evidence Support:


Prediction-Evidence cRep//Rep
Support Database RepTar

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