Detail Information

Basic Information:


  VIRBase ID:  

VHID00646797

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-9:           Rab11b:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mghv-miR-M1-9 Rab11b
miRBase
Accession/Entrez ID		 MIMAT0001573 19326
Organism Murid gammaherpesvirus 4 (MuHV-4) Mus musculus
Category miRNA mRNA
Alias - A730055L17Rik

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR Rab11b
chr17:33880940(-) A-I      3'UTR
chr17:33880946(-) A-I      3'UTR
chr17:33889794(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED Rab11b
chr17:33743995(-) A-I exon 3'UTR    22524474
chr17:33744001(-) A-I exon 3'UTR    22524474
chr17:33752849(-) A-I intron -    22524474

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Rab11b
chr17:33746600-33746601(-) m6A 3'UTR       24981863//25456834//22608085
chr17:33746670-33746671(-) m6A 3'UTR       24981863//25456834
chr17:33746684-33746685(-) m6A 3'UTR       24981863//25456834
chr17:33746720-33746721(-) m6A 3'UTR       24981863
chr17:33746802-33746803(-) m6A 3'UTR       24981863//25456834
chr17:33746892-33746893(-) m6A 3'UTR       24981863//25456834
chr17:33747005-33747006(-) m6A 3'UTR       24981863
chr17:33747058-33747059(-) m6A 3'UTR       24981863//25456834//25569111//22608085
chr17:33747111-33747112(-) m6A 3'UTR       24981863//25456834//25569111//22608085
chr17:33747126-33747127(-) m6A 3'UTR       25683224//24981863//25456834//25569111//22608085
chr17:33747148-33747149(-) m6A 3'UTR       25683224//24981863//25456834//25569111//22608085
chr17:33747186-33747187(-) m6A 3'UTR       25683224//24981863//25456834//25569111//22608085
chr17:33747364-33747365(-) m6A 3'UTR       24981863
chr17:33747526-33747527(-) m6A 3'UTR//intron       25412662
chr17:33747555-33747556(-) m6A 3'UTR//intron       25412662//24981863
chr17:33747590-33747591(-) m6A 3'UTR//intron       25412662//24981863
chr17:33747700-33747701(-) m6A 3'UTR//CDS//intron       24981863//25569111
chr17:33747706-33747707(-) m6A 3'UTR//CDS//intron       24981863//25569111
chr17:33747734-33747735(-) m6A 3'UTR//CDS//intron       24981863//25569111
chr17:33748520-33748521(-) m6A 3'UTR//CDS       24981863//25569111
chr17:33748563-33748564(-) m6A 3'UTR//CDS       24981863//25569111
chr17:33760255-33760256(-) m6A CDS//exon       24981863//22608085
chr17:33760264-33760265(-) m6A 5'UTR//exon       25412662//24981863
chr17:33760351-33760352(-) m6A 5'UTR//exon       25683224//25412662//24981863//25569111
chr17:33760468-33760469(-) m6A 5'UTR//exon       25683224//25456834//25412662//24981863//25569111

Interaction Network (The top 100 interactions):


Interactor1: mghv-miR-M1-9
Interactor2: Rab11b

Evidence Support:


Prediction-Evidence cRep//Rep
Support Database RepTar

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