Basic Information:

  VIRBase ID:  

VHID00644542

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-8-5p:  MIMAT0001572          Smarca2:  NM_001347439     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mghv-miR-M1-8-5p	Smarca2
miRBase Accession/Entrez ID	MIMAT0001572	67155
Organism	Murid gammaherpesvirus 4 (MuHV-4)	Mus musculus
Category	miRNA	mRNA
Alias	-	2610209L14Rik//br//brahma//brm//Snf//SNF2alpha//Snf2l2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	Smarca2	chr19:26847958(+) A-I      intronic chr19:26847911(+) A-I      intronic chr19:26847960(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	Smarca2	chr19:26773421(+) A-I intron -    22524474 chr19:26773468(+) A-I intron -    22524474 chr19:26773470(+) A-I intron -    22524474

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Smarca2	chr19:26619713-26619714(+) m6A 5'UTR//intron       25683224//25412662//24981863 chr19:26619735-26619736(+) m6A CDS//intron       25683224//25412662//24981863 chr19:26619778-26619779(+) m6A CDS//intron       25683224//25412662//22608085 chr19:26619790-26619791(+) m6A CDS//intron       25683224//25412662//22608085 chr19:26619814-26619815(+) m6A CDS//intron       25683224//22608085 chr19:26619820-26619821(+) m6A CDS//intron       25683224//22608085 chr19:26623995-26623996(+) m6A CDS       25683224//25412662//24981863//22608085 chr19:26630807-26630808(+) m6A CDS       25412662//24981863 chr19:26630914-26630915(+) m6A CDS       25412662//24981863 chr19:26630944-26630945(+) m6A CDS       25412662//24981863 chr19:26640601-26640602(+) m6A CDS       25412662//22608085 chr19:26640615-26640616(+) m6A CDS       25412662//22608085 chr19:26647053-26647054(+) m6A CDS       25412662//22608085 chr19:26647110-26647111(+) m6A CDS       25412662//22608085 chr19:26648988-26648989(+) m6A CDS       25412662//22608085 chr19:26649017-26649018(+) m6A CDS       25412662//22608085 chr19:26649073-26649074(+) m6A CDS       25412662//24981863//22608085 chr19:26649102-26649103(+) m6A CDS       25412662//24981863 chr19:26649126-26649127(+) m6A CDS       25412662//24981863 chr19:26649150-26649151(+) m6A CDS       25412662//24981863 chr19:26651558-26651559(+) m6A CDS       25412662//24981863 chr19:26654386-26654387(+) m6A CDS       25683224//25412662//24981863 chr19:26654415-26654416(+) m6A CDS       25683224//25412662//24981863 chr19:26664079-26664080(+) m6A CDS       25683224//25412662//24981863 chr19:26664091-26664092(+) m6A CDS       25683224//25412662//24981863 chr19:26668809-26668810(+) m6A CDS       25683224//25412662//24981863 chr19:26668829-26668830(+) m6A CDS       25683224//25412662//24981863 chr19:26669157-26669158(+) m6A CDS       25412662//24981863//22608085 chr19:26671113-26671114(+) m6A CDS//exon       25412662//22608085 chr19:26683867-26683868(+) m6A CDS//exon       25412662//22608085 chr19:26692198-26692199(+) m6A CDS//exon       25412662//22608085 chr19:26692208-26692209(+) m6A CDS//exon       25412662//22608085 chr19:26706190-26706191(+) m6A CDS//exon       25412662//22608085 chr19:26710473-26710474(+) m6A CDS//exon//intron       25412662//22608085 chr19:26710702-26710703(+) m6A exon//intron       25683224//25412662//24981863 chr19:26716141-26716142(+) m6A CDS//exon       25683224//25412662 chr19:26716148-26716149(+) m6A CDS//exon       25683224//25412662 chr19:26720735-26720736(+) m6A CDS//exon       25683224//25412662//24981863 chr19:26720741-26720742(+) m6A CDS//exon       25683224//25412662//24981863 chr19:26720765-26720766(+) m6A CDS//exon       25683224//25412662//24981863 chr19:26720778-26720779(+) m6A CDS//exon       25683224//25412662//24981863 chr19:26720909-26720910(+) m6A CDS//exon       25683224//25412662//24981863 chr19:26721994-26721995(+) m6A exon//intron       25683224//25412662//24981863 chr19:26748496-26748497(+) m6A 5'UTR//intron       24981863//25569111 chr19:26750338-26750339(+) m6A 5'UTR//exon//intron       24981863 chr19:26751905-26751906(+) m6A 3'UTR//CDS//exon       25683224//25412662//24981863 chr19:26751987-26751988(+) m6A 3'UTR//CDS//exon       25683224//25412662//24981863 chr19:26752028-26752029(+) m6A 3'UTR//CDS//exon       25412662//24981863 chr19:26752037-26752038(+) m6A 3'UTR//CDS//exon       25412662//24981863 chr19:26770987-26770988(+) m6A 3'UTR//CDS//exon//intron       24981863 chr19:26771544-26771545(+) m6A 3'UTR//CDS//exon       24981863 chr19:26771585-26771586(+) m6A 3'UTR//CDS//exon       24981863 chr19:26773509-26773510(+) m6A exon//intron       25683224//25412662//24981863 chr19:26774182-26774183(+) m6A 3'UTR//CDS//exon       25683224//25412662//24981863 chr19:26774266-26774267(+) m1A 3'UTR//CDS//exon       26863196 chr19:26774275-26774276(+) m1A 3'UTR//CDS//exon       26863196 chr19:26775926-26775927(+) m6A CDS//intron       25683224//25412662//24981863 chr19:26775932-26775933(+) m6A CDS//intron       25683224//25412662//24981863 chr19:26776154-26776155(+) m6A 3'UTR//CDS//exon       25683224//25412662//24981863 chr19:26776181-26776182(+) m6A 3'UTR//CDS//exon       25683224//25412662//24981863 chr19:26776197-26776198(+) m6A 3'UTR//CDS//exon       25683224//25412662//24981863 chr19:26776230-26776231(+) m6A 3'UTR//CDS//exon       25683224//25412662//24981863 chr19:26777336-26777337(+) m6A 3'UTR//CDS//exon       25412662//24981863 chr19:26777355-26777356(+) m6A 3'UTR//CDS//exon       25412662//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Smarca2	Nucleus Neuroblastoma cell line (N2A)     22406755 Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mghv-miR-M1-8-5p
Interactor2: Smarca2

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar