Detail Information

Basic Information:


  VIRBase ID:  

VHID00644095

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-8-5p:           Arih1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mghv-miR-M1-8-5p Arih1
miRBase
Accession/Entrez ID		 MIMAT0001572 23806
Organism Murid gammaherpesvirus 4 (MuHV-4) Mus musculus
Category miRNA mRNA
Alias - Ari//Ari1//AU021774//Hari//Hhari//Ubch7bp//UIP//Uip77

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR Arih1
chr9:59246158(-) A-I      intronic
chr9:59246516(-) A-I      intronic
chr9:59246153(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED Arih1
chr9:59398346(-) A-I intron -    22524474
chr9:59398351(-) A-I intron -    22524474
chr9:59398709(-) A-I intron -    22524474

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Arih1
chr9:59390671-59390672(-) Y 3'UTR//exon       26075521
chr9:59391231-59391232(-) m6A 3'UTR       24981863//22608085
chr9:59392708-59392709(-) m6A 3'UTR       24981863
chr9:59392716-59392717(-) m6A 3'UTR       24981863
chr9:59392737-59392738(-) m6A 3'UTR       24981863
chr9:59392745-59392746(-) m6A 3'UTR       24981863
chr9:59392752-59392753(-) m6A 3'UTR       24981863
chr9:59392909-59392910(-) m6A 3'UTR       24981863
chr9:59392939-59392940(-) m6A 3'UTR       24981863
chr9:59393068-59393069(-) m6A 3'UTR       25683224//24981863
chr9:59393112-59393113(-) m6A 3'UTR       25683224//24981863
chr9:59393220-59393221(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr9:59393230-59393231(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr9:59393262-59393263(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr9:59393271-59393272(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr9:59393291-59393292(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr9:59393297-59393298(-) m6A 3'UTR//CDS       25683224//25456834//24981863//25569111//26404942//22608085
chr9:59405784-59405785(-) m6A CDS//exon       25569111//22608085
chr9:59426682-59426683(-) m6A CDS//exon       25569111//22608085
chr9:59436844-59436845(-) m6A CDS//exon       25569111//22608085
chr9:59436900-59436901(-) m6A CDS//exon       25569111//22608085
chr9:59471826-59471827(-) m6A intron       25683224//24981863//25569111
chr9:59471864-59471865(-) m6A intron       25683224//24981863//25569111
chr9:59471910-59471911(-) m6A intron       25683224//24981863//25569111
chr9:59471961-59471962(-) m6A intron       25683224//25569111
chr9:59471980-59471981(-) m6A intron       25683224//25569111
chr9:59472063-59472064(-) m6A intron       25683224
chr9:59472117-59472118(-) m6A intron       25683224
chr9:59472137-59472138(-) m6A intron       25683224
chr9:59472151-59472152(-) m6A intron       25683224
chr9:59472177-59472178(-) m6A intron       25683224
chr9:59486032-59486033(-) m6A CDS//exon//intron       25683224//25412662//24981863//25569111
chr9:59486077-59486078(-) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111
chr9:59486151-59486152(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr9:59486167-59486168(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr9:59486285-59486286(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr9:59486342-59486343(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr9:59486457-59486458(-) m6A 5'UTR       25683224//25412662//24981863//25456834//25569111

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Arih1
Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):


Interactor1: mghv-miR-M1-8-5p
Interactor2: Arih1

Evidence Support:


Prediction-Evidence cRep//Rep
Support Database RepTar

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