Detail Information

Basic Information:


  VIRBase ID:  

VHID00643237

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.4752

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-7-3p:           Ube3c:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mghv-miR-M1-7-3p Ube3c
miRBase
Accession/Entrez ID		 MIMAT0001571 100763
Organism Murid gammaherpesvirus 4 (MuHV-4) Mus musculus
Category miRNA mRNA
Alias - AI853514//mKIAA0010

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR Ube3c
chr5:29961589(+) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Ube3c
chr5:29569333-29569334(+) m6A 5'UTR       25412662//24981863//25569111
chr5:29569413-29569414(+) m6A 5'UTR       25412662//24981863//25569111
chr5:29569541-29569542(+) m6A CDS//exon       25412662//25569111//22608085
chr5:29646512-29646513(+) m6A CDS       25569111//22608085
chr5:29646555-29646556(+) m6A CDS       25569111//22608085
chr5:29658291-29658292(+) m6A CDS       24981863//22608085
chr5:29658315-29658316(+) m6A CDS       24981863//22608085
chr5:29658333-29658334(+) m6A CDS       24981863//22608085
chr5:29658373-29658374(+) m6A CDS       24981863//22608085
chr5:29658379-29658380(+) m6A CDS       24981863//22608085
chr5:29658384-29658385(+) m6A CDS       24981863//22608085
chr5:29658399-29658400(+) m6A CDS       24981863//22608085
chr5:29663470-29663471(+) m6A CDS       24981863//22608085
chr5:29663490-29663491(+) m6A CDS       24981863//22608085
chr5:29674474-29674475(+) m6A CDS       24981863//25569111
chr5:29674583-29674584(+) m6A 3'UTR       25456834//24981863//25569111//26404942//22608085
chr5:29674619-29674620(+) m6A 3'UTR       25456834//24981863//25569111//26404942//22608085
chr5:29674642-29674643(+) m6A 3'UTR       25456834//24981863//25569111//26404942//22608085
chr5:29674738-29674739(+) m6A 3'UTR       25456834//24981863//25569111//26404942
chr5:29674993-29674994(+) m6A 3'UTR       25569111
chr5:29675121-29675122(+) m6A 3'UTR       24981863//22608085
chr5:29675151-29675152(+) m6A 3'UTR       24981863
chr5:29675335-29675336(+) m6A 3'UTR       24981863//25569111//22608085
chr5:29675418-29675419(+) m6A 3'UTR       24981863//25569111//22608085
chr5:29675470-29675471(+) m6A 3'UTR       24981863//25569111//22608085
chr5:29675544-29675545(+) m6A 3'UTR       24981863//25569111//22608085
chr5:29675575-29675576(+) m6A 3'UTR       24981863//25456834//25569111//22608085
chr5:29675634-29675635(+) m6A 3'UTR       25683224//24981863//25456834//25569111//22608085
chr5:29675641-29675642(+) m6A 3'UTR       25683224//24981863//25456834//25569111//22608085
chr5:29675707-29675708(+) m6A 3'UTR       25683224//24981863//25569111//26404942//22608085
chr5:29675741-29675742(+) m6A 3'UTR       25683224//24981863//25569111//26404942//22608085
chr5:29675760-29675761(+) m6A 3'UTR       25683224//24981863//25569111//26404942//22608085
chr5:29675777-29675778(+) m6A 3'UTR       24981863//26404942

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Ube3c
Exosome Mast cells     17486113

Interaction Network (The top 100 interactions):


Interactor1: mghv-miR-M1-7-3p
Interactor2: Ube3c

Evidence Support:


Weak-Evidence qCLASH
Support Database ViRBase

References:


PMID 31363027 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line B cells Interactor2 expression None
Description Table S4. Host mRNA targets of mghv-miR-M1-7-5p and mghv-miR-M1-7-3p identified by qCLASH in HE2.1 B cells.

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