Basic Information:

  VIRBase ID:  

VHID00643118

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.4752

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-7-3p:  MIMAT0001571          Ddx3x:  NM_010028     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mghv-miR-M1-7-3p	Ddx3x
miRBase Accession/Entrez ID	MIMAT0001571	13205
Organism	Murid gammaherpesvirus 4 (MuHV-4)	Mus musculus
Category	miRNA	mRNA
Alias	-	D1Pas//D1Pas1-rs2//Ddx3//Fin//Fin14

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Ddx3x	chrX:13281085-13281086(+) m6A 5'UTR//exon       25412662//24981863//25569111//22575960 chrX:13281149-13281150(+) m6A CDS//exon       24981863//25569111 chrX:13284190-13284191(+) m6A CDS//exon       24981863//25569111 chrX:13284196-13284197(+) m6A CDS//exon       24981863//25569111 chrX:13284944-13284945(+) m6A CDS//exon       24981863//25569111//22608085 chrX:13286048-13286049(+) m6A CDS//exon       24981863//25569111//22608085 chrX:13287247-13287248(+) m6A CDS//exon//intron       24981863//22608085 chrX:13287380-13287381(+) m6A CDS//exon//intron       25412662//22608085 chrX:13287466-13287467(+) m6A CDS//exon//intron       25412662//22608085 chrX:13287821-13287822(+) m6A CDS//exon//intron       25412662//22608085 chrX:13290557-13290558(+) m6A CDS//intron       22608085 chrX:13290976-13290977(+) m6A CDS//intron       22608085 chrX:13291002-13291003(+) m6A CDS//intron       24981863//25569111//22608085 chrX:13291015-13291016(+) m6A CDS//intron       24981863//25569111//22608085 chrX:13291194-13291195(+) m6A CDS//intron       24981863//25569111//22608085 chrX:13291521-13291522(+) m6A 3'UTR//intron       25456834//24981863//25569111//22608085//22575960 chrX:13291537-13291538(+) m6A 3'UTR//intron       25456834//24981863//25569111//26404942//22608085//22575960 chrX:13291557-13291558(+) m6A 3'UTR//intron       25456834//24981863//25569111//26404942//22608085//22575960 chrX:13291581-13291582(+) m6A 3'UTR//intron       25456834//24981863//25569111//26404942//22608085//22575960 chrX:13291664-13291665(+) m6A 3'UTR//intron       25456834//24981863//25569111//26404942 chrX:13291698-13291699(+) m6A 3'UTR//intron       24981863//25569111//26404942 chrX:13291750-13291751(+) m6A 3'UTR//exon       24981863//25569111 chrX:13291815-13291816(+) m6A 3'UTR//exon       24981863//25569111 chrX:13291893-13291894(+) m6A 3'UTR//exon       24981863 chrX:13291910-13291911(+) m6A 3'UTR//exon       24981863//22608085 chrX:13291979-13291980(+) m6A 3'UTR//exon       24981863//22608085 chrX:13292031-13292032(+) m6A 3'UTR       24981863//22608085 chrX:13292657-13292658(+) m6A 3'UTR       24981863//22608085 chrX:13293138-13293139(+) m6A 3'UTR       25412662//22608085 chrX:13293201-13293202(+) m6A 3'UTR       25412662//22608085 chrX:13293225-13293226(+) m6A 3'UTR       25412662//22608085 chrX:13293252-13293253(+) m6A 3'UTR       25412662//22608085 chrX:13293313-13293314(+) m6A 3'UTR       25412662//22608085

Interaction Network (The top 100 interactions):

Interactor1: mghv-miR-M1-7-3p
Interactor2: Ddx3x

Evidence Support:

Weak-Evidence	qCLASH
Support Database	ViRBase

References:

PMID	31363027	Target region	None
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	B cells	Interactor2 expression	None
Description	Table S4. Host mRNA targets of mghv-miR-M1-7-5p and mghv-miR-M1-7-3p identified by qCLASH in HE2.1 B cells.