Basic Information:

  VIRBase ID:  

VHID00642286

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.8847

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-7-5p:  MIMAT0001570          Arhgef18:  NM_133962     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mghv-miR-M1-7-5p	Arhgef18
miRBase Accession/Entrez ID	MIMAT0001570	102098
Organism	Murid gammaherpesvirus 4 (MuHV-4)	Mus musculus
Category	miRNA	mRNA
Alias	-	A430078G23Rik//AI467246//D030053O22Rik

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Arhgef18	chr8:3393041-3393042(+) m6A 5'UTR//exon       25412662//24981863//25569111 chr8:3393091-3393092(+) m6A 5'UTR//exon       25412662//24981863//25569111 chr8:3393149-3393150(+) m6A 5'UTR//intron       25412662//24981863//25569111 chr8:3393160-3393161(+) m6A 5'UTR//intron       25412662//25569111 chr8:3427371-3427372(+) m6A 5'UTR//exon       25412662//25569111 chr8:3432629-3432630(+) m6A CDS//exon       22608085 chr8:3432756-3432757(+) m6A CDS//exon       25683224//25569111 chr8:3439537-3439538(+) m6A CDS//exon       24981863 chr8:3445024-3445025(+) m6A CDS//exon       25683224//25412662 chr8:3445030-3445031(+) m6A CDS//exon       25683224//25412662 chr8:3447073-3447074(+) m6A CDS//exon       25683224//25412662 chr8:3448400-3448401(+) m6A CDS//exon       25412662//22608085 chr8:3448431-3448432(+) m6A CDS//exon       25412662//22608085 chr8:3448487-3448488(+) m6A CDS//exon       25683224//25412662//22608085 chr8:3448514-3448515(+) m6A CDS//exon       25683224//25412662//22608085 chr8:3448525-3448526(+) m6A CDS//exon       25683224//25412662//22608085 chr8:3448626-3448627(+) m6A exon//intron       25683224//25412662 chr8:3448663-3448664(+) m6A exon//intron       25683224//25412662 chr8:3451648-3451649(+) m6A CDS//exon       25683224 chr8:3451908-3451909(+) m6A CDS//exon       25683224//25412662//24981863//25569111 chr8:3452044-3452045(+) m6A CDS//exon       25683224//25412662//24981863//25569111 chr8:3452112-3452113(+) m6A CDS//exon       25683224//25412662//24981863//25569111 chr8:3452196-3452197(+) m6A CDS//exon       25683224//25412662//24981863//25569111 chr8:3452239-3452240(+) m6A CDS//exon       25683224//25412662//24981863//25569111 chr8:3452244-3452245(+) m6A CDS//exon       25683224//25412662//24981863//25569111 chr8:3453115-3453116(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr8:3453147-3453148(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr8:3453185-3453186(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr8:3453268-3453269(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111 chr8:3453425-3453426(+) m6A exon//intron       25683224//25412662 chr8:3453455-3453456(+) m6A exon//intron       25683224//25412662 chr8:3454227-3454228(+) m6A CDS//exon       25683224//25412662 chr8:3454371-3454372(+) m6A CDS//exon       25683224//25412662//24981863 chr8:3454557-3454558(+) m6A 3'UTR//exon       24981863//25569111 chr8:3454852-3454853(+) m6A 3'UTR//exon       25683224//25456834//24981863//25569111 chr8:3454877-3454878(+) m6A 3'UTR//exon       25683224//25456834//24981863//25569111 chr8:3454897-3454898(+) m6A 3'UTR//exon       25683224//25456834//24981863//25569111 chr8:3454944-3454945(+) m6A 3'UTR//exon       25683224//25456834//24981863//25569111 chr8:3454975-3454976(+) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085 chr8:3455108-3455109(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr8:3455143-3455144(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr8:3455281-3455282(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr8:3455307-3455308(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr8:3455392-3455393(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111 chr8:3455479-3455480(+) m6A 3'UTR//exon       24981863//25569111 chr8:3455515-3455516(+) m6A 3'UTR//exon       - chr8:3455553-3455554(+) m6A 3'UTR//exon       - chr8:3456213-3456214(+) m6A 3'UTR//exon       25569111 chr8:3456255-3456256(+) m6A 3'UTR//exon       24981863//25569111 chr8:3456365-3456366(+) m6A 3'UTR//exon       25569111 chr8:3456373-3456374(+) m6A 3'UTR//exon       25569111

Interaction Network (The top 100 interactions):

Interactor1: mghv-miR-M1-7-5p
Interactor2: Arhgef18

Evidence Support:

Strong-Evidence	qRT-PCR
Weak-Evidence	qCLASH
Prediction-Evidence	Rep
Support Database	RepTar//ViRBase

References:

PMID	31363027	Target region	None
Source	ViRBase	Interactor1 expression	Upregulation
Tissue or cell line	NIH 3T12 cells	Interactor2 expression	Downregulation
Description	Table S4. Host mRNA targets of mghv-miR-M1-7-5p and mghv-miR-M1-7-3p identified by qCLASH in HE2.1 B cells.