Basic Information:

  VIRBase ID:  

VHID00641872

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-7-5p:  MIMAT0001570          Gpatch2:  NM_026367     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mghv-miR-M1-7-5p	Gpatch2
miRBase Accession/Entrez ID	MIMAT0001570	67769
Organism	Murid gammaherpesvirus 4 (MuHV-4)	Mus musculus
Category	miRNA	mRNA
Alias	-	5830433G22Rik//5830436K05Rik//AI427714//AI447508//AW107440//AW491060//Gpat//Gpatc2

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Gpatch2	chr1:187215656-187215657(+) m6A CDS//exon       25683224//25412662//25569111 chr1:187215796-187215797(+) m6A 5'UTR//intron       25683224//25412662//25569111 chr1:187215874-187215875(+) m6A 5'UTR//intron       25683224//25412662 chr1:187225515-187225516(+) m6A 5'UTR//CDS//exon       25683224//25412662 chr1:187225593-187225594(+) m6A CDS//exon       25683224//25456834//25412662//25569111 chr1:187225601-187225602(+) m6A CDS//exon       25683224//25456834//25412662//25569111 chr1:187225695-187225696(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111 chr1:187225739-187225740(+) m6A CDS//exon       25683224//25456834//24981863//25569111 chr1:187225750-187225751(+) m6A CDS//exon       25683224//25456834//24981863//25569111 chr1:187225783-187225784(+) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr1:187225837-187225838(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr1:187225897-187225898(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr1:187225909-187225910(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr1:187225983-187225984(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr1:187226020-187226021(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr1:187226026-187226027(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr1:187226105-187226106(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr1:187226112-187226113(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr1:187226167-187226168(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr1:187226186-187226187(+) m6A 5'UTR//CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr1:187229647-187229648(+) m6A exon//intron       25683224//25456834//25412662//24981863//25569111 chr1:187230840-187230841(+) m6A 5'UTR//CDS//exon       25683224//25412662 chr1:187232759-187232760(+) m6A CDS//intron       25683224//25412662 chr1:187232797-187232798(+) m6A 3'UTR//intron       25683224//25412662 chr1:187233235-187233236(+) m6A 3'UTR//5'UTR//CDS//exon       25683224//22608085 chr1:187234024-187234025(+) m6A 3'UTR//intron       25456834 chr1:187234050-187234051(+) m6A 3'UTR//intron       25456834 chr1:187234079-187234080(+) m6A 3'UTR//intron       25456834 chr1:187316548-187316549(+) m6A 3'UTR//CDS//intron       25412662 chr1:187322318-187322319(+) m6A 3'UTR//CDS//intron       25412662 chr1:187322343-187322344(+) m6A 3'UTR//CDS//intron       25412662//24981863//25569111 chr1:187341490-187341491(+) m6A 3'UTR//CDS       25683224//25412662//24981863//25569111 chr1:187341524-187341525(+) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111 chr1:187341561-187341562(+) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111 chr1:187348404-187348405(+) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111 chr1:187348430-187348431(+) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr1:187348510-187348511(+) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr1:187348566-187348567(+) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr1:187348588-187348589(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr1:187348751-187348752(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr1:187348795-187348796(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr1:187348888-187348889(+) m6A 3'UTR       24981863//25569111 chr1:187349385-187349386(+) m6A 3'UTR       24981863 chr1:187349430-187349431(+) m6A 3'UTR       24981863 chr1:187349472-187349473(+) m6A 3'UTR       24981863 chr1:187349480-187349481(+) m6A 3'UTR       24981863 chr1:187349500-187349501(+) m6A 3'UTR       24981863 chr1:187349524-187349525(+) m6A 3'UTR       24981863 chr1:187349792-187349793(+) m6A 3'UTR       25456834 chr1:187349827-187349828(+) m6A 3'UTR       25456834//24981863 chr1:187349844-187349845(+) m6A 3'UTR       25456834//24981863 chr1:187349865-187349866(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr1:187349912-187349913(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr1:187349922-187349923(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr1:187349943-187349944(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr1:187349975-187349976(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr1:187349994-187349995(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr1:187350061-187350062(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr1:187350077-187350078(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr1:187350096-187350097(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr1:187350155-187350156(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr1:187350192-187350193(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr1:187350307-187350308(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr1:187350345-187350346(+) m6A 3'UTR       25456834//25412662//24981863//25569111//22608085 chr1:187350354-187350355(+) m6A 3'UTR       25456834//25412662//24981863//25569111//22608085 chr1:187350400-187350401(+) m6A 3'UTR       25456834//24981863//25569111 chr1:187350502-187350503(+) m6A 3'UTR       24981863 chr1:187351118-187351119(+) m6A 3'UTR       25456834 chr1:187351135-187351136(+) m6A 3'UTR       25456834 chr1:187351145-187351146(+) m6A 3'UTR       25456834//25569111 chr1:187351165-187351166(+) m6A 3'UTR       25456834//25569111 chr1:187351216-187351217(+) m6A 3'UTR       25456834//24981863//25569111 chr1:187351279-187351280(+) m6A 3'UTR       24981863//25569111 chr1:187351301-187351302(+) m6A 3'UTR       24981863 chr1:187351312-187351313(+) m6A 3'UTR       24981863 chr1:187351324-187351325(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Gpatch2	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mghv-miR-M1-7-5p
Interactor2: Gpatch2

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar