Detail Information

Basic Information:


  VIRBase ID:  

VHID00641602

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.5711

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-7-5p:           Bysl:      

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Interactor Information:


Interactor1 Interactor2
Symbol mghv-miR-M1-7-5p Bysl
miRBase
Accession/Entrez ID		 MIMAT0001570 53414
Organism Murid gammaherpesvirus 4 (MuHV-4) Mus musculus
Category miRNA mRNA
Alias - Bys//En//Enp1

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Bysl
chr17:47599436-47599437(-) m1A 3'UTR       26863196
chr17:47600302-47600303(-) m6A 3'UTR       24981863
chr17:47600887-47600888(-) m6A 3'UTR       25683224//24981863//25569111
chr17:47600913-47600914(-) m6A 3'UTR       25683224//24981863//25569111
chr17:47601071-47601072(-) m6A 3'UTR       25683224//24981863
chr17:47601109-47601110(-) m6A 3'UTR       25683224//24981863//25569111
chr17:47601254-47601255(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr17:47601423-47601424(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr17:47601472-47601473(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr17:47601484-47601485(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr17:47601506-47601507(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr17:47601517-47601518(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr17:47601549-47601550(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr17:47601652-47601653(-) Y CDS//exon       26075521
chr17:47603883-47603884(-) m6A CDS       25569111
chr17:47604334-47604335(-) m6A CDS       25683224
chr17:47604346-47604347(-) m6A CDS       25683224
chr17:47606856-47606857(-) m6A CDS       25683224//25412662//24981863
chr17:47606892-47606893(-) m6A CDS       25683224//25412662//24981863
chr17:47606916-47606917(-) m6A CDS       25683224//25412662//24981863//25569111
chr17:47610963-47610964(-) m6A CDS       25683224//25412662//24981863//25569111
chr17:47610985-47610986(-) m6A CDS       25683224//25412662//24981863//25569111
chr17:47611021-47611022(-) m6A CDS       25683224//25412662//24981863//25569111
chr17:47611074-47611075(-) m6A CDS       25683224//25412662//24981863//25569111
chr17:47611197-47611198(-) m6A 5'UTR       25683224//25412662//24981863//25569111
chr17:47611248-47611249(-) m6A 5'UTR       25683224//24981863//25569111
chr17:47611396-47611397(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Bysl
Cytoplasm Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):


Interactor1: mghv-miR-M1-7-5p
Interactor2: Bysl

Evidence Support:


Weak-Evidence qCLASH
Prediction-Evidence Rep
Support Database RepTar//ViRBase

References:


PMID 31363027 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line B cells Interactor2 expression None
Description Table S4. Host mRNA targets of mghv-miR-M1-7-5p and mghv-miR-M1-7-3p identified by qCLASH in HE2.1 B cells.

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