Basic Information:

  VIRBase ID:  

VHID00641303

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.8847

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-7-5p:  MIMAT0001570          Rgs16:  NM_011267     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mghv-miR-M1-7-5p	Rgs16
miRBase Accession/Entrez ID	MIMAT0001570	19734
Organism	Murid gammaherpesvirus 4 (MuHV-4)	Mus musculus
Category	miRNA	mRNA
Alias	-	R//Rgs14//Rgsr

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Rgs16	chr1:153740368-153740369(+) m6A 5'UTR       25412662 chr1:153742013-153742014(+) m6A CDS       25683224//25412662 chr1:153742068-153742069(+) m6A CDS       25683224//25412662//24981863 chr1:153743637-153743638(+) m6A CDS       25683224//25412662//24981863//25569111//22575960 chr1:153743651-153743652(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:153743659-153743660(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:153743669-153743670(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:153743673-153743674(+) m6A CDS       25412662//24981863 chr1:153743720-153743721(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:153743742-153743743(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:153743971-153743972(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:153743979-153743980(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:153744009-153744010(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:153744052-153744053(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:153744068-153744069(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:153744131-153744132(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:153744181-153744182(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:153744190-153744191(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:153744223-153744224(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:153744264-153744265(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:153744294-153744295(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr1:153744326-153744327(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr1:153744588-153744589(+) m6A 3'UTR       25683224//25412662 chr1:153744667-153744668(+) m6A 3'UTR       25683224//25412662 chr1:153744753-153744754(+) m6A 3'UTR       25683224//25412662 chr1:153744768-153744769(+) m6A 3'UTR       25683224//25412662 chr1:153744900-153744901(+) m6A 3'UTR       25683224//25412662//24981863 chr1:153744917-153744918(+) m6A 3'UTR       25683224//25412662//24981863 chr1:153744991-153744992(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr1:153745028-153745029(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr1:153745047-153745048(+) m6A 3'UTR       25683224//25456834//25412662//24981863//22608085 chr1:153745075-153745076(+) m6A 3'UTR       25683224//25456834//25412662//24981863//22608085 chr1:153745085-153745086(+) Y 3'UTR//exon       26075521 chr1:153745119-153745120(+) m6A 3'UTR       25683224//25412662//24981863//22608085 chr1:153745256-153745257(+) m6A 3'UTR       25683224//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Rgs16	Cytoplasm Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mghv-miR-M1-7-5p
Interactor2: Rgs16

Evidence Support:

Strong-Evidence	qRT-PCR
Weak-Evidence	qCLASH
Prediction-Evidence	cRep
Support Database	RepTar//ViRBase

References:

PMID	31363027	Target region	None
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	NIH 3T12 cells	Interactor2 expression	Upregulation
Description	Table S4. Host mRNA targets of mghv-miR-M1-7-5p and mghv-miR-M1-7-3p identified by qCLASH in HE2.1 B cells.