Detail Information

Basic Information:


  VIRBase ID:  

VHID00640807

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.9374

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol mghv-miR-M1-8-5p Ctsl
miRBase
Accession/Entrez ID		 MIMAT000157 13039
Organism Murid gammaherpesvirus 4 (MuHV-4) Mus musculus
Category miRNA mRNA
Alias - 1190035F06Rik//CatL//Ctsl1//fs//ME//MEP//nkt

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Ctsl
chr13:64364016-64364017(-) m6A 3'UTR       24981863//25569111//26404942//22575960
chr13:64364032-64364033(-) m6A 3'UTR       24981863//25569111//26404942//22575960
chr13:64364041-64364042(-) m6A 3'UTR       24981863//25569111//26404942//22575960
chr13:64364070-64364071(-) m6A 3'UTR       24981863//25569111//26404942//22575960
chr13:64364078-64364079(-) m6A 3'UTR       24981863//25569111//26404942
chr13:64364133-64364134(-) m6A CDS       24981863//25569111//26404942
chr13:64364146-64364147(-) m6A CDS       24981863//25569111//26404942
chr13:64364152-64364153(-) m6A CDS       24981863//25569111//26404942
chr13:64365207-64365208(-) m6A CDS       24981863//25569111//26404942//22608085
chr13:64365244-64365245(-) m6A CDS       26404942//22608085
chr13:64366898-64366899(-) m6A CDS       25569111//22608085
chr13:64366985-64366986(-) m6A CDS       25569111//22608085
chr13:64366994-64366995(-) m6A CDS       25569111//22608085
chr13:64366999-64367000(-) m6A CDS       25569111//22608085
chr13:64367017-64367018(-) m6A CDS       25569111//22608085
chr13:64367025-64367026(-) m6A CDS       25569111//22608085
chr13:64367041-64367042(-) m6A CDS       25569111//22608085
chr13:64367863-64367864(-) m6A CDS       25569111//22608085
chr13:64367899-64367900(-) m6A CDS       25412662//25569111//22608085
chr13:64367931-64367932(-) m6A CDS       25412662//25569111//22608085
chr13:64368200-64368201(-) m6A CDS       25412662//24981863//25569111//26404942//22608085
chr13:64369039-64369040(-) m6A CDS       25412662//24981863//25569111//26404942//22608085
chr13:64369083-64369084(-) m6A CDS       25412662//24981863//25569111//22608085
chr13:64369113-64369114(-) m6A CDS       25412662//24981863//25569111//22608085
chr13:64369155-64369156(-) m6A 5'UTR       24981863//25569111//22575960
chr13:64370262-64370263(-) m6A 5'UTR       24981863//25569111//22575960
chr13:64370295-64370296(-) m6A 5'UTR       24981863//25569111//22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Ctsl
Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):


Interactor1: mghv-miR-M1-8-5p
Interactor2: Ctsl

Evidence Support:


Strong-Evidence qRT-PCR//Western blot
Weak-Evidence qCLASH
Support Database ViRBase

References:


PMID 31393953 Target region None
Source ViRBase Interactor1 expression Upregulation
Tissue or cell line None Interactor2 expression Downregulation
Description QCLASH-identified targeting miRNAs were: miR-8-5p for Ctsl, miR-7-5p for Ewsr1, miR-7-5p for Ifitm3, and miR-12-3p for Foxj3.

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