Basic Information:

  VIRBase ID:  

VHID00640725

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-6-3p:  MIMAT0001569          Zyg11b:  NM_001033634     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mghv-miR-M1-6-3p	Zyg11b
miRBase Accession/Entrez ID	MIMAT0001569	414872
Organism	Murid gammaherpesvirus 4 (MuHV-4)	Mus musculus
Category	miRNA	mRNA
Alias	-	1110046I03Rik//2810482G21Rik//D4Mgi2//D4Mgi23//Gm431//mKIAA1730

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	Zyg11b	chr4:107905278(-) A-I      3'UTR chr4:107903481(-) A-I      3'UTR chr4:107903225(-) A-I      3'UTR chr4:107903541(-) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	Zyg11b	chr4:108230876(-) C-I exon 3'UTR    22448268 chr4:108230936(-) C-I exon 3'UTR    22448268 chr4:108230620(-) A-I exon 3'UTR    22524474 chr4:108232673(-) A-I exon 3'UTR    22524474

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Zyg11b	chr4:108229930-108229931(-) m6A 3'UTR       24981863 chr4:108230000-108230001(-) m6A 3'UTR       24981863//26404942 chr4:108230005-108230006(-) m6A 3'UTR       24981863//26404942 chr4:108230195-108230196(-) m6A 3'UTR       26404942//22608085 chr4:108231269-108231270(-) m6A 3'UTR       24981863//26404942 chr4:108231322-108231323(-) m6A 3'UTR       24981863//26404942 chr4:108231352-108231353(-) m6A 3'UTR       24981863//26404942 chr4:108231364-108231365(-) m6A 3'UTR       24981863//26404942 chr4:108231414-108231415(-) m6A 3'UTR       24981863//26404942 chr4:108231504-108231505(-) m6A 3'UTR       24981863 chr4:108233563-108233564(-) m6A 3'UTR       24981863//26404942//22608085 chr4:108233572-108233573(-) m6A 3'UTR       24981863//26404942//22608085 chr4:108233580-108233581(-) m6A 3'UTR       24981863//26404942//22608085 chr4:108233630-108233631(-) m6A 3'UTR       24981863//26404942//22608085 chr4:108234699-108234700(-) m6A 3'UTR       24981863//22608085 chr4:108234745-108234746(-) m6A 3'UTR       24981863//22608085 chr4:108234750-108234751(-) m6A 3'UTR       24981863//22608085 chr4:108234765-108234766(-) m6A 3'UTR       24981863//22608085 chr4:108234804-108234805(-) m6A 3'UTR       24981863//22608085 chr4:108234817-108234818(-) m6A 3'UTR       24981863//22608085 chr4:108234826-108234827(-) m6A 3'UTR       24981863//22608085 chr4:108235978-108235979(-) m6A 3'UTR       25456834//24981863//25569111//26404942 chr4:108236066-108236067(-) m6A CDS       25683224//25456834//24981863//25569111//26404942 chr4:108236079-108236080(-) m6A CDS       25683224//25456834//24981863//25569111//26404942 chr4:108236119-108236120(-) m6A CDS       25683224//24981863//25569111//26404942 chr4:108236129-108236130(-) m6A CDS       25683224//24981863//25569111//26404942 chr4:108236156-108236157(-) m6A CDS       24981863//25569111//26404942 chr4:108255354-108255355(-) m6A CDS       22608085 chr4:108259959-108259960(-) m6A CDS       25569111//22608085 chr4:108260068-108260069(-) m6A CDS       25683224//24981863//25569111//22608085 chr4:108265826-108265827(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr4:108265926-108265927(-) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr4:108265980-108265981(-) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr4:108266010-108266011(-) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr4:108266024-108266025(-) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr4:108266049-108266050(-) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr4:108266057-108266058(-) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr4:108266142-108266143(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr4:108266207-108266208(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr4:108266337-108266338(-) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr4:108266400-108266401(-) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr4:108266441-108266442(-) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr4:108266554-108266555(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr4:108272232-108272233(-) m6A CDS       24981863//25569111 chr4:108272292-108272293(-) m6A CDS       24981863//25569111//22608085 chr4:108300909-108300910(-) m6A CDS       25412662//24981863//25569111//22608085 chr4:108300930-108300931(-) m6A 5'UTR       25412662//24981863//25569111//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Zyg11b	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mghv-miR-M1-6-3p
Interactor2: Zyg11b

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar