Basic Information:

  VIRBase ID:  

VHID00640565

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-6-3p:  MIMAT0001569          Trappc11:  NM_177240     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mghv-miR-M1-6-3p	Trappc11
miRBase Accession/Entrez ID	MIMAT0001569	320714
Organism	Murid gammaherpesvirus 4 (MuHV-4)	Mus musculus
Category	miRNA	mRNA
Alias	-	AW558465//D030016E14Rik//R75422

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Trappc11	chr8:47490596-47490597(-) m6A 3'UTR//exon       24981863//25456834//22608085//22575960 chr8:47490675-47490676(-) m6A 3'UTR//exon       25412662//24981863//25456834//25569111//22608085//22575960 chr8:47490733-47490734(-) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111 chr8:47490757-47490758(-) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111 chr8:47490829-47490830(-) m6A 3'UTR//exon       25569111 chr8:47504442-47504443(-) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085 chr8:47504485-47504486(-) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085 chr8:47504499-47504500(-) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085 chr8:47504508-47504509(-) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085 chr8:47504518-47504519(-) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085 chr8:47504548-47504549(-) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085 chr8:47504558-47504559(-) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085 chr8:47504579-47504580(-) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085 chr8:47504684-47504685(-) m6A 3'UTR//intron       25683224//25569111 chr8:47505461-47505462(-) m6A CDS//exon       25412662//22608085 chr8:47505612-47505613(-) m6A CDS//exon       25412662//22608085 chr8:47513456-47513457(-) m6A exon//intron       25412662//22608085 chr8:47513477-47513478(-) m6A exon//intron       25412662//22608085 chr8:47513498-47513499(-) m6A exon//intron       25412662//22608085 chr8:47513538-47513539(-) m6A exon//intron       25412662//22608085 chr8:47513552-47513553(-) m6A exon//intron       25412662 chr8:47513575-47513576(-) m6A exon//intron       25412662 chr8:47513771-47513772(-) m6A CDS//exon       25412662//22608085 chr8:47513918-47513919(-) Y CDS//exon       26075521 chr8:47528009-47528010(-) m6A CDS//exon       25412662//22608085 chr8:47529391-47529392(-) m6A CDS//exon       25412662//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Trappc11	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mghv-miR-M1-6-3p
Interactor2: Trappc11

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar