Detail Information

Basic Information:


  VIRBase ID:  

VHID00640537

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-6-3p:           Rps6kc1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mghv-miR-M1-6-3p Rps6kc1
miRBase
Accession/Entrez ID		 MIMAT0001569 320119
Organism Murid gammaherpesvirus 4 (MuHV-4) Mus musculus
Category miRNA mRNA
Alias - AA682037//B130003F20Rik//C80612//RPK1//Rpk118

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Rps6kc1
chr1:190772918-190772919(-) m6A 3'UTR//intron       24981863
chr1:190772935-190772936(-) m6A 3'UTR//intron       24981863
chr1:190773113-190773114(-) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:190773132-190773133(-) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:190773181-190773182(-) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:190773190-190773191(-) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:190773206-190773207(-) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:190773261-190773262(-) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:190773266-190773267(-) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:190773269-190773270(-) Y 3'UTR//exon//intron       26075521
chr1:190773300-190773301(-) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:190773317-190773318(-) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:190773486-190773487(-) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:190773492-190773493(-) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:190773566-190773567(-) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:190773591-190773592(-) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:190782580-190782581(-) m6A 3'UTR//CDS//intron       25683224
chr1:190796159-190796160(-) m6A exon//intron       25456834
chr1:190796264-190796265(-) m6A exon//intron       25683224//25456834//24981863
chr1:190796269-190796270(-) m6A exon//intron       25683224//25456834//24981863
chr1:190796325-190796326(-) m6A exon//intron       25456834//24981863
chr1:190796332-190796333(-) m6A exon//intron       25456834
chr1:190796377-190796378(-) m6A exon//intron       25456834
chr1:190796510-190796511(-) m6A exon//intron       25456834
chr1:190796522-190796523(-) m6A exon//intron       25456834
chr1:190796530-190796531(-) m6A exon//intron       25456834
chr1:190796572-190796573(-) m6A exon//intron       25456834
chr1:190796589-190796590(-) m6A exon//intron       25456834
chr1:190796595-190796596(-) m6A exon//intron       25456834
chr1:190798444-190798445(-) m6A exon//intron       25456834
chr1:190798511-190798512(-) m6A exon//intron       25456834
chr1:190798739-190798740(-) m6A 3'UTR//CDS//exon//intron       -
chr1:190799004-190799005(-) m6A exon//intron       25456834//24981863//25569111
chr1:190799035-190799036(-) m6A 3'UTR//CDS//exon//intron       25683224//25456834//24981863//25412662//25569111//22608085
chr1:190799041-190799042(-) m6A 3'UTR//CDS//exon//intron       25683224//25456834//24981863//25412662//25569111//22608085
chr1:190799170-190799171(-) m6A 3'UTR//CDS//exon//intron       25683224//25456834//25412662//24981863//25569111
chr1:190799197-190799198(-) m6A 3'UTR//CDS//exon//intron       25683224//25456834//25412662//24981863//25569111
chr1:190799239-190799240(-) m6A 3'UTR//CDS//exon//intron       25683224//25456834//25412662//24981863//25569111
chr1:190799257-190799258(-) m6A 3'UTR//CDS//exon//intron       25683224//25456834//25412662//24981863//25569111
chr1:190799277-190799278(-) m6A 3'UTR//CDS//exon//intron       25683224//25456834//24981863//25569111
chr1:190799331-190799332(-) m6A 3'UTR//CDS//exon//intron       25683224//24981863//25569111
chr1:190799461-190799462(-) m6A 3'UTR//CDS//exon//intron       25683224//25456834//25412662//24981863//25569111
chr1:190799571-190799572(-) m6A 3'UTR//CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:190799589-190799590(-) m6A 3'UTR//CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:190799607-190799608(-) m6A 3'UTR//CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:190799652-190799653(-) m6A 3'UTR//CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:190799695-190799696(-) m6A 3'UTR//CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr1:190799727-190799728(-) m6A 3'UTR//CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr1:190799848-190799849(-) m6A 3'UTR//CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr1:190799905-190799906(-) m6A 3'UTR//CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr1:190799946-190799947(-) m6A 3'UTR//CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr1:190799979-190799980(-) m6A 3'UTR//CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr1:190800001-190800002(-) m6A 3'UTR//CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr1:190800010-190800011(-) m6A 3'UTR//CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr1:190800037-190800038(-) m6A 3'UTR//CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr1:190800187-190800188(-) m6A 3'UTR//CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:190800232-190800233(-) m6A 3'UTR//CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:190800386-190800387(-) m6A 3'UTR//CDS//exon//intron       25683224//25456834//25412662//24981863//25569111
chr1:190800504-190800505(-) m6A 3'UTR//CDS//exon//intron       25683224//25412662//25569111//22608085
chr1:190800520-190800521(-) m6A 3'UTR//CDS//exon//intron       25683224//25412662//25569111//22608085
chr1:190800544-190800545(-) m6A 3'UTR//CDS//exon//intron       25683224//22608085
chr1:190800573-190800574(-) m6A 3'UTR//CDS//exon//intron       25683224//22608085
chr1:190844492-190844493(-) m6A 3'UTR//CDS//exon//intron       25683224//25412662//22608085
chr1:190844560-190844561(-) m6A 3'UTR//CDS//exon//intron       25683224//25412662
chr1:190871682-190871683(-) m6A 3'UTR//CDS//exon       25683224//24981863//25569111
chr1:190871691-190871692(-) m6A 3'UTR//CDS//exon       25683224//24981863//25569111
chr1:190871770-190871771(-) m6A 3'UTR//CDS//exon       24981863//25569111//22608085
chr1:190871787-190871788(-) m6A 3'UTR//CDS//exon       24981863//25569111//22608085
chr1:190871905-190871906(-) m6A 3'UTR//CDS//exon       25683224//22608085
chr1:190885371-190885372(-) m6A 3'UTR//CDS//exon//intron       25683224//22608085
chr1:190888658-190888659(-) m6A 3'UTR//CDS//exon//intron       25683224//22608085
chr1:190888715-190888716(-) m6A 3'UTR//CDS//exon//intron       25683224//22608085
chr1:190899459-190899460(-) m6A 3'UTR//CDS//exon       25683224//22608085
chr1:190911631-190911632(-) m6A CDS//exon       25412662//24981863//25569111

Interaction Network (The top 100 interactions):


Interactor1: mghv-miR-M1-6-3p
Interactor2: Rps6kc1

Evidence Support:


Prediction-Evidence cRep//Rep
Support Database RepTar

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