Detail Information

Basic Information:


  VIRBase ID:  

VHID00640516

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-6-3p:           Eml5:      

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Interactor Information:


Interactor1 Interactor2
Symbol mghv-miR-M1-6-3p Eml5
miRBase
Accession/Entrez ID		 MIMAT0001569 319670
Organism Murid gammaherpesvirus 4 (MuHV-4) Mus musculus
Category miRNA mRNA
Alias - BC027154//C130068M19Rik

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR Eml5
chr12:100134419(-) A-I      intronic
chr12:100134434(-) A-I      intronic
chr12:100134426(-) A-I      intronic
chr12:100134425(-) A-I      intronic
chr12:100135334(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED Eml5
chr12:98896209(-) A-I intron -    22524474
chr12:98896215(-) A-I intron -    22524474
chr12:98896216(-) A-I intron -    22524474
chr12:98896224(-) A-I intron -    22524474
chr12:98897124(-) A-I intron -    22524474

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Eml5
chr12:98789304-98789305(-) m6A 3'UTR       25456834//24981863//22608085
chr12:98789340-98789341(-) m6A 3'UTR       25456834//24981863//22608085
chr12:98789392-98789393(-) m6A 3'UTR       25456834//24981863//25569111//22608085
chr12:98789406-98789407(-) m6A 3'UTR       25456834//24981863//25569111//22608085
chr12:98789412-98789413(-) m6A 3'UTR       25456834//24981863//25569111//22608085
chr12:98790056-98790057(-) m6A 3'UTR       25456834
chr12:98790197-98790198(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085
chr12:98790245-98790246(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085
chr12:98790274-98790275(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085
chr12:98790279-98790280(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085
chr12:98790285-98790286(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085
chr12:98790305-98790306(-) m6A 3'UTR       25456834//25412662//24981863//22608085
chr12:98790324-98790325(-) m6A 3'UTR       25456834//25412662
chr12:98790329-98790330(-) m6A 3'UTR       25456834//25412662
chr12:98794459-98794460(-) m6A CDS       24981863
chr12:98794488-98794489(-) m6A CDS       25683224//24981863
chr12:98794511-98794512(-) m6A CDS       25683224//24981863
chr12:98794600-98794601(-) m6A CDS       25683224
chr12:98796545-98796546(-) m6A CDS       25683224
chr12:98796550-98796551(-) m6A CDS       25412662//22608085
chr12:98796581-98796582(-) m6A CDS       25412662//22608085
chr12:98796596-98796597(-) m6A CDS       25412662//22608085
chr12:98798819-98798820(-) m6A CDS       25412662//22608085
chr12:98844075-98844076(-) m6A CDS       24981863
chr12:98901250-98901251(-) m6A 5'UTR       25412662//25569111
chr12:98901284-98901285(-) m6A 5'UTR       25412662
chr12:98901417-98901418(-) m6A 5'UTR       25412662

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Eml5
Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):


Interactor1: mghv-miR-M1-6-3p
Interactor2: Eml5

Evidence Support:


Prediction-Evidence cRep//Rep
Support Database RepTar

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