Detail Information

Basic Information:


  VIRBase ID:  

VHID00639805

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-6-3p:           Rsrc2:      

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Interactor Information:


Interactor1 Interactor2
Symbol mghv-miR-M1-6-3p Rsrc2
miRBase
Accession/Entrez ID		 MIMAT0001569 208606
Organism Murid gammaherpesvirus 4 (MuHV-4) Mus musculus
Category miRNA mRNA
Alias - 1500011J06Rik

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR Rsrc2
chr5:124191261(-) A-I      intronic
chr5:124191297(-) A-I      intronic
chr5:124191308(-) A-I      intronic
chr5:124191296(-) A-I      intronic
chr5:124191271(-) A-I      intronic
chr5:124191312(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED Rsrc2
chr5:123741252(-) A-I intron -    22524474
chr5:123741262(-) A-I intron -    22524474
chr5:123741287(-) A-I intron -    22524474
chr5:123741288(-) A-I intron -    22524474
chr5:123741299(-) A-I intron -    22524474
chr5:123741303(-) A-I intron -    22524474

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Rsrc2
chr5:123728966-123728967(-) m6A 3'UTR//exon       24981863//25569111
chr5:123728977-123728978(-) m6A 3'UTR//exon       24981863//25569111
chr5:123728987-123728988(-) m6A 3'UTR//exon       24981863//25569111
chr5:123729149-123729150(-) m6A 3'UTR//exon       25412662//24981863//25569111//26404942
chr5:123729158-123729159(-) m6A 3'UTR//exon       25412662//24981863//25569111//26404942
chr5:123729241-123729242(-) m6A 3'UTR//CDS//exon       25412662//24981863//25569111
chr5:123729307-123729308(-) m6A 3'UTR//CDS//exon       25412662//24981863
chr5:123730491-123730492(-) m6A 3'UTR//CDS//exon       25412662//24981863
chr5:123730497-123730498(-) m6A 3'UTR//CDS//exon       25412662//24981863
chr5:123733574-123733575(-) m6A 3'UTR//CDS//exon       24981863//25456834
chr5:123733607-123733608(-) m6A 3'UTR//CDS//exon       25683224//24981863//25456834
chr5:123733706-123733707(-) m6A 3'UTR//intron       25683224//24981863
chr5:123736486-123736487(-) m6A 3'UTR//exon//intron       24981863
chr5:123736594-123736595(-) m6A 3'UTR//5'UTR//CDS//exon       25683224//25412662//24981863//25569111
chr5:123736625-123736626(-) m6A 3'UTR//5'UTR//CDS//exon       25683224//25412662//24981863//25569111
chr5:123736656-123736657(-) m6A 3'UTR//5'UTR//CDS//exon       25683224//25412662//24981863//25569111
chr5:123739525-123739526(-) m6A 3'UTR//5'UTR//CDS//exon       25683224//25412662//24981863//25569111
chr5:123739538-123739539(-) m6A 3'UTR//5'UTR//CDS//exon       25683224//25412662//24981863
chr5:123739561-123739562(-) m6A 3'UTR//5'UTR//CDS//exon       25683224//25412662//24981863
chr5:123739611-123739612(-) m6A 3'UTR//5'UTR//CDS//exon       25683224//25412662//24981863
chr5:123740740-123740741(-) m6A 3'UTR//5'UTR//CDS//exon       25683224//25412662//24981863
chr5:123740793-123740794(-) m6A 3'UTR//5'UTR//CDS//exon       25683224//25412662//24981863//25569111
chr5:123740823-123740824(-) m6A 3'UTR//5'UTR//CDS//exon       25683224//25412662//24981863//25569111
chr5:123740853-123740854(-) m6A 3'UTR//5'UTR//CDS//exon       25683224//25412662//24981863//25569111
chr5:123740865-123740866(-) m6A 3'UTR//CDS//exon//intron       25683224//25412662//24981863//25569111
chr5:123740882-123740883(-) m6A 3'UTR//CDS//exon//intron       25683224//25412662//24981863//25569111
chr5:123742758-123742759(-) m6A exon//intron       25412662
chr5:123742815-123742816(-) m6A 3'UTR//5'UTR//exon//intron       25412662//24981863
chr5:123742831-123742832(-) m6A 3'UTR//5'UTR//exon//intron       25412662//24981863
chr5:123742836-123742837(-) m6A 5'UTR//CDS//exon//intron       25412662//24981863
chr5:123742972-123742973(-) m6A exon//intron       25412662//24981863
chr5:123742988-123742989(-) m6A exon//intron       25683224//24981863
chr5:123742997-123742998(-) m6A exon//intron       25683224//24981863
chr5:123743108-123743109(-) m6A exon//intron       25683224//24981863
chr5:123745006-123745007(-) m6A 5'UTR//CDS//exon       25683224//24981863//25569111
chr5:123745071-123745072(-) m6A 5'UTR//CDS//exon       24981863//25569111
chr5:123745147-123745148(-) m6A exon//intron       24981863//25569111
chr5:123745177-123745178(-) m6A exon//intron       24981863//25569111
chr5:123745210-123745211(-) m6A exon//intron       24981863//25569111
chr5:123746793-123746794(-) m6A 5'UTR//exon//intron       24981863//25569111
chr5:123749306-123749307(-) m6A 5'UTR//exon       24981863//25569111

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Rsrc2
Nucleus Neuroblastoma cell line (N2A)     22406755
Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):


Interactor1: mghv-miR-M1-6-3p
Interactor2: Rsrc2

Evidence Support:


Prediction-Evidence cRep
Support Database RepTar

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