Detail Information

Basic Information:


  VIRBase ID:  

VHID00638493

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-6-3p:           Becn1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mghv-miR-M1-6-3p Becn1
miRBase
Accession/Entrez ID		 MIMAT0001569 56208
Organism Murid gammaherpesvirus 4 (MuHV-4) Mus musculus
Category miRNA mRNA
Alias - Atg//Atg6

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR Becn1
chr11:101158083(-) A-I      intronic
chr11:101158086(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED Becn1
chr11:101296769(-) A-I intron -    22524474
chr11:101296772(-) A-I intron -    22524474

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Becn1
chr11:101287519-101287520(-) m6A 3'UTR       24981863
chr11:101287625-101287626(-) m6A 3'UTR       24981863//25569111
chr11:101287676-101287677(-) m6A 3'UTR       25569111
chr11:101288344-101288345(-) m6A 3'UTR//exon       -
chr11:101294031-101294032(-) m6A 3'UTR//CDS//exon       24981863//22608085
chr11:101294045-101294046(-) m6A 3'UTR//CDS//exon       24981863//22608085
chr11:101294075-101294076(-) m6A 3'UTR//CDS//exon       24981863//22608085
chr11:101294092-101294093(-) m6A 3'UTR//CDS//exon       24981863//22608085
chr11:101294295-101294296(-) m6A exon//intron       25412662
chr11:101294645-101294646(-) m6A exon//intron       24981863
chr11:101294685-101294686(-) m6A exon//intron       25683224//24981863//25456834
chr11:101294728-101294729(-) m6A exon//intron       25683224
chr11:101294805-101294806(-) m6A exon//intron       25683224
chr11:101294984-101294985(-) m6A 3'UTR//CDS//exon//intron       25683224//25412662//24981863
chr11:101295020-101295021(-) m6A 3'UTR//CDS//exon//intron       25683224//25412662//24981863
chr11:101295041-101295042(-) m6A 3'UTR//CDS//exon//intron       25683224//25412662//24981863
chr11:101295300-101295301(-) m6A 3'UTR//CDS//exon//intron       25683224//25412662//24981863//22608085
chr11:101295336-101295337(-) m6A 3'UTR//CDS//exon//intron       25683224//25412662//22608085
chr11:101295345-101295346(-) m6A 3'UTR//CDS//exon//intron       25683224//25412662//22608085
chr11:101295357-101295358(-) m6A 3'UTR//CDS//exon//intron       25683224//25412662//22608085
chr11:101295394-101295395(-) m6A 3'UTR//CDS//exon//intron       25683224//22608085
chr11:101295420-101295421(-) m6A 3'UTR//CDS//exon//intron       25683224//22608085
chr11:101295539-101295540(-) m6A 3'UTR//CDS//exon//intron       25683224//22608085
chr11:101295552-101295553(-) m6A 3'UTR//CDS//exon//intron       25683224//22608085
chr11:101301753-101301754(-) m6A CDS//exon       25569111//22608085
chr11:101301774-101301775(-) m6A CDS//exon       25569111//22608085
chr11:101301779-101301780(-) m6A CDS//exon       25412662//25569111
chr11:101301962-101301963(-) m6A 5'UTR//intron       25412662//25569111
chr11:101302035-101302036(-) m6A 5'UTR//intron       25412662//25569111
chr11:101302040-101302041(-) m6A 5'UTR//intron       25412662//25569111
chr11:101302103-101302104(-) m6A 5'UTR//intron       25412662//25569111
chr11:101302192-101302193(-) m6A 5'UTR//exon       25412662//24981863//25569111//22608085
chr11:101302218-101302219(-) m6A 5'UTR//exon       25412662//24981863//25569111
chr11:101302232-101302233(-) m6A 5'UTR//exon       25412662//24981863//25569111

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Becn1
Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):


Interactor1: mghv-miR-M1-6-3p
Interactor2: Becn1

Evidence Support:


Prediction-Evidence cRep
Support Database RepTar

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