Basic Information:

  VIRBase ID:  

VHID00638435

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-6-3p:  MIMAT0001569          Caprin1:  NM_016739     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mghv-miR-M1-6-3p	Caprin1
miRBase Accession/Entrez ID	MIMAT0001569	53872
Organism	Murid gammaherpesvirus 4 (MuHV-4)	Mus musculus
Category	miRNA	mRNA
Alias	-	AL022980//cap//Caprin-1//Gp//Gpiap//Gpiap1//MMGPIP//Mmgpip137//P137//RNG1//rng105

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	Caprin1	chr2:103616842(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Caprin1	chr2:103766002-103766003(-) m6A 3'UTR       24981863//25569111//26404942 chr2:103766022-103766023(-) m6A 3'UTR       24981863//25569111//26404942 chr2:103766042-103766043(-) m6A 3'UTR       24981863//25569111//26404942//22608085 chr2:103766142-103766143(-) m6A 3'UTR       24981863//22608085 chr2:103766182-103766183(-) m6A 3'UTR       24981863//22608085 chr2:103766332-103766333(-) m6A 3'UTR       24981863//26404942//22608085 chr2:103766410-103766411(-) m6A 3'UTR       24981863//26404942//22608085 chr2:103766521-103766522(-) m6A 3'UTR       24981863//26404942 chr2:103766614-103766615(-) m6A 3'UTR       24981863//26404942 chr2:103766655-103766656(-) m6A 3'UTR       24981863//25569111//26404942 chr2:103766660-103766661(-) m6A 3'UTR       24981863//25569111//26404942 chr2:103766680-103766681(-) m6A 3'UTR       24981863//25569111//26404942 chr2:103766695-103766696(-) m6A 3'UTR       24981863//25569111//26404942 chr2:103766764-103766765(-) m6A 3'UTR       24981863//25569111//26404942 chr2:103766817-103766818(-) m6A CDS       24981863//25569111 chr2:103766843-103766844(-) m6A CDS       24981863//25569111//22608085 chr2:103768288-103768289(-) m6A 3'UTR//intron       24981863 chr2:103768343-103768344(-) m6A 3'UTR//intron       24981863//22608085 chr2:103768424-103768425(-) m6A CDS       24981863//22608085 chr2:103769553-103769554(-) m6A CDS//exon//intron       26404942//22608085 chr2:103769601-103769602(-) m6A CDS//exon//intron       24981863//26404942//22608085 chr2:103771710-103771711(-) m6A CDS//exon       24981863//26404942//22608085 chr2:103771730-103771731(-) m6A CDS//exon       24981863//26404942//22608085 chr2:103771793-103771794(-) m6A CDS//exon       24981863//26404942//22608085 chr2:103771808-103771809(-) m6A CDS//exon       24981863//26404942//22608085 chr2:103772725-103772726(-) m6A CDS//exon       24981863//22608085 chr2:103772733-103772734(-) m6A CDS//exon       24981863//22608085 chr2:103772790-103772791(-) m6A CDS//exon       24981863//22608085 chr2:103772795-103772796(-) m6A CDS//exon       24981863//22608085 chr2:103775757-103775758(-) m6A CDS//exon       24981863//26404942//22608085 chr2:103775941-103775942(-) m6A CDS//exon       24981863//26404942//22608085 chr2:103775950-103775951(-) m6A CDS//exon       24981863//26404942//22608085 chr2:103775992-103775993(-) m6A CDS//exon       25412662//24981863//26404942//22608085 chr2:103777979-103777980(-) m6A CDS//exon       25683224//25412662//24981863//22608085 chr2:103778057-103778058(-) m6A CDS//exon       25683224//25412662//24981863//22608085 chr2:103779169-103779170(-) m6A CDS//exon       25683224//25412662//24981863//22608085 chr2:103779227-103779228(-) m6A CDS//exon       25412662//22608085 chr2:103779430-103779431(-) m6A CDS//exon       25412662//24981863//26404942//22608085 chr2:103779441-103779442(-) m6A CDS//exon       24981863//22608085 chr2:103779495-103779496(-) m6A CDS//exon       24981863//22608085 chr2:103779511-103779512(-) m6A CDS//exon       24981863 chr2:103779535-103779536(-) m6A CDS//exon       24981863 chr2:103779549-103779550(-) m6A CDS//exon       24981863 chr2:103779561-103779562(-) m6A CDS//exon       24981863 chr2:103782606-103782607(-) m6A exon//intron       24981863 chr2:103782908-103782909(-) m6A exon//intron       24981863 chr2:103783149-103783150(-) m6A CDS//exon       24981863//22608085 chr2:103783199-103783200(-) m6A CDS//exon       24981863//22608085 chr2:103788158-103788159(-) m6A exon//intron       24981863//22608085 chr2:103788182-103788183(-) m6A exon//intron       24981863//22608085 chr2:103796328-103796329(-) m6A exon//intron       25683224 chr2:103796334-103796335(-) m6A exon//intron       25683224 chr2:103796462-103796463(-) m6A exon//intron       25683224//22608085 chr2:103796795-103796796(-) m6A CDS//exon       25412662//25569111//22608085 chr2:103796892-103796893(-) m6A CDS//exon       25412662//25569111 chr2:103797574-103797575(-) m6A 5'UTR//exon       25412662//24981863//25456834//25569111//22575960

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Caprin1	Exosome Mast cells     17486113 Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mghv-miR-M1-6-3p
Interactor2: Caprin1

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar