Basic Information:

  VIRBase ID:  

VHID00638057

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-6-3p:  MIMAT0001569          Son:  NM_178880     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mghv-miR-M1-6-3p	Son
miRBase Accession/Entrez ID	MIMAT0001569	20658
Organism	Murid gammaherpesvirus 4 (MuHV-4)	Mus musculus
Category	miRNA	mRNA
Alias	-	2900011L12Rik//AA409051//AU067731//C81487//mKIAA1019//nrebp

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	Son	chr16:91656471(+) A-I      Syn:Leu->Leu chr16:91656331(+) A-I      NonSyn:Thr->Ala chr16:91656378(+) A-I      Syn:Leu->Leu chr16:91656334(+) A-I      NonSyn:Arg->Gly chr16:91655860(+) A-I      NonSyn:Thr->Ala chr16:91656315(+) A-I      Syn:Ser->Ser

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	Son	chr16:91655615(+) A-I exon CDS    22524474 chr16:91656070(+) A-I exon CDS    22524474 chr16:91656086(+) A-I exon CDS    22524474 chr16:91656089(+) A-I exon CDS    22524474 chr16:91656133(+) A-I exon CDS    22524474 chr16:91656226(+) A-I exon CDS    22524474

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Son	chr16:91647870-91647871(+) m6A 5'UTR       25412662//24981863//25456834//25569111//22608085//22575960 chr16:91651660-91651661(+) m6A CDS       24981863//25569111 chr16:91651682-91651683(+) m6A CDS       24981863//25569111 chr16:91654654-91654655(+) m6A CDS//intron       24981863//25569111 chr16:91654712-91654713(+) m6A CDS//intron       24981863//25456834//25569111//22608085 chr16:91654758-91654759(+) m6A CDS//intron       25683224//24981863//25456834//25569111//22608085 chr16:91654842-91654843(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr16:91654863-91654864(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr16:91654903-91654904(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr16:91654920-91654921(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr16:91654966-91654967(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr16:91654995-91654996(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr16:91655061-91655062(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr16:91655194-91655195(+) m6A CDS//intron       25683224//24981863//25569111//26404942//22608085 chr16:91655218-91655219(+) m6A CDS//intron       25683224//25412662//24981863//25569111//26404942//22608085 chr16:91655266-91655267(+) m6A CDS//intron       25683224//25412662//24981863//25569111//26404942//22608085 chr16:91655287-91655288(+) m6A CDS//intron       25683224//25412662//24981863//25569111//26404942//22608085//22575960 chr16:91655310-91655311(+) m6A CDS//intron       25683224//25412662//24981863//25569111//26404942//22608085//22575960 chr16:91655421-91655422(+) m6A CDS//intron       25683224//25412662//24981863//25569111//26404942//22608085//22575960 chr16:91655449-91655450(+) m6A CDS//intron       25683224//25412662//24981863//25569111//22608085 chr16:91655865-91655866(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr16:91656445-91656446(+) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085//22575960 chr16:91656467-91656468(+) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085//22575960 chr16:91656517-91656518(+) m6A CDS//intron       25683224//25456834//24981863//25412662//25569111//22608085//22575960 chr16:91656545-91656546(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr16:91656605-91656606(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr16:91656635-91656636(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr16:91656665-91656666(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr16:91656695-91656696(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr16:91656725-91656726(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr16:91656755-91656756(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr16:91656785-91656786(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr16:91656815-91656816(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr16:91656845-91656846(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr16:91656875-91656876(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr16:91656905-91656906(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr16:91656935-91656936(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr16:91657185-91657186(+) m6A CDS//intron       24981863//25569111 chr16:91657190-91657191(+) m6A CDS//intron       24981863//25569111 chr16:91657221-91657222(+) m6A CDS//intron       24981863//25569111 chr16:91657317-91657318(+) m6A CDS//intron       24981863//25569111 chr16:91657839-91657840(+) m6A CDS//intron       24981863//25569111//22608085 chr16:91657872-91657873(+) m6A CDS//intron       24981863//25569111//22608085 chr16:91658053-91658054(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr16:91658094-91658095(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr16:91658157-91658158(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr16:91658178-91658179(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr16:91658203-91658204(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr16:91658260-91658261(+) m6A CDS//intron       25456834//24981863//25569111//22608085 chr16:91658269-91658270(+) m6A CDS//intron       25456834//24981863//25569111//22608085 chr16:91658286-91658287(+) m6A CDS//intron       25456834//24981863//25569111//22608085 chr16:91658295-91658296(+) m6A CDS//intron       25456834//24981863//25569111//22608085 chr16:91658363-91658364(+) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085 chr16:91658469-91658470(+) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085 chr16:91658493-91658494(+) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085 chr16:91658518-91658519(+) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085 chr16:91658541-91658542(+) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085 chr16:91658586-91658587(+) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085 chr16:91658610-91658611(+) m6A CDS//intron       25683224//25456834//24981863//25569111//22608085 chr16:91658715-91658716(+) m6A CDS//intron       25683224//24981863//25569111 chr16:91658757-91658758(+) m6A CDS//intron       25683224//24981863//25569111 chr16:91658778-91658779(+) m6A CDS//intron       25683224//24981863//25569111 chr16:91658799-91658800(+) m6A CDS//intron       25683224//24981863//25569111 chr16:91658876-91658877(+) m6A CDS//intron       25683224//25456834//24981863//25569111//26404942//22608085 chr16:91658965-91658966(+) m6A CDS//intron       25683224//25456834//24981863//25569111//26404942//22608085 chr16:91659003-91659004(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr16:91659050-91659051(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr16:91659062-91659063(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr16:91659166-91659167(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr16:91659268-91659269(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr16:91659360-91659361(+) m6A CDS//intron       25683224//25456834//24981863//25569111//26404942//22608085 chr16:91659407-91659408(+) m6A CDS//intron       25683224//25456834//24981863//25569111//26404942//22608085 chr16:91659417-91659418(+) m6A CDS//intron       25683224//25456834//24981863//25569111//26404942//22608085 chr16:91659434-91659435(+) m6A CDS//intron       25683224//25456834//24981863//25569111//26404942//22608085 chr16:91659485-91659486(+) m6A CDS//intron       25683224//25456834//24981863//25569111//26404942//22608085 chr16:91659645-91659646(+) m6A CDS//intron       25683224//25456834//24981863//25569111//26404942//22608085 chr16:91659662-91659663(+) m6A CDS//intron       25683224//25456834//24981863//25412662//25569111//26404942//22608085 chr16:91659702-91659703(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr16:91659833-91659834(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr16:91659857-91659858(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr16:91659863-91659864(+) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr16:91659896-91659897(+) m6A CDS//intron       25683224//25412662//24981863//25456834//25569111//22608085 chr16:91659939-91659940(+) m6A CDS//intron       25683224//25412662//24981863//25456834//25569111//22608085 chr16:91660021-91660022(+) m6A CDS//intron       25683224//25412662//24981863//25569111 chr16:91660178-91660179(+) m6A CDS//intron       25683224//25412662//24981863//25569111 chr16:91660210-91660211(+) m6A CDS//intron       25683224//25412662//24981863//25569111 chr16:91660315-91660316(+) m6A CDS//intron       25683224//25412662//24981863//25569111 chr16:91660336-91660337(+) m6A CDS//intron       25683224//25412662//24981863//25569111//22608085 chr16:91660357-91660358(+) m6A CDS//intron       25683224//25412662//24981863//25569111//22608085 chr16:91660378-91660379(+) m6A CDS//intron       25683224//25412662//24981863//25569111//22608085 chr16:91660399-91660400(+) m6A CDS//intron       25683224//25412662//24981863//25569111//22608085 chr16:91662178-91662179(+) m6A CDS       24981863//25569111 chr16:91662251-91662252(+) m6A CDS       24981863//25569111 chr16:91662504-91662505(+) m6A 3'UTR//intron       25683224//25456834//24981863//25569111 chr16:91662639-91662640(+) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr16:91662645-91662646(+) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr16:91662719-91662720(+) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr16:91663152-91663153(+) m6A 3'UTR//intron       24981863 chr16:91663238-91663239(+) m6A 3'UTR//intron       24981863//22608085 chr16:91663974-91663975(+) m6A 3'UTR//intron       24981863 chr16:91664205-91664206(+) m6A CDS       25412662//24981863 chr16:91664250-91664251(+) m6A CDS//exon       25412662//24981863//22608085 chr16:91664280-91664281(+) m6A CDS//exon       25412662//24981863//22608085 chr16:91664307-91664308(+) m6A CDS//exon       24981863//22608085 chr16:91664316-91664317(+) m6A CDS//exon       24981863//22608085 chr16:91672260-91672261(+) m6A 3'UTR//exon//intron       25683224//22608085 chr16:91672274-91672275(+) m6A 3'UTR//exon//intron       25683224//22608085 chr16:91672298-91672299(+) m6A 3'UTR//exon//intron       25683224//22608085 chr16:91672429-91672430(+) m6A 3'UTR//exon//intron       25683224//22608085 chr16:91672490-91672491(+) m6A 3'UTR//exon//intron       25683224//22608085 chr16:91672676-91672677(+) m6A 3'UTR//exon//intron       25683224//24981863//25569111 chr16:91672739-91672740(+) m6A 3'UTR//intron       24981863//25569111 chr16:91674973-91674974(+) m6A exon//intron       25412662//22608085 chr16:91675009-91675010(+) m6A exon//intron       25412662//22608085 chr16:91675018-91675019(+) m6A exon//intron       25412662//22608085 chr16:91675494-91675495(+) m6A 3'UTR//CDS//exon       25412662//24981863 chr16:91675513-91675514(+) m6A 3'UTR//CDS//exon       25412662//24981863 chr16:91675535-91675536(+) m6A 3'UTR//CDS//exon       25412662//24981863 chr16:91677446-91677447(+) m6A 3'UTR//CDS//exon       24981863 chr16:91678265-91678266(+) m6A 3'UTR//CDS//exon       24981863//25569111//26404942//22608085//22575960 chr16:91678401-91678402(+) m6A 3'UTR//exon       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Son	Nucleus Neuroblastoma cell line (N2A)     22406755 Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mghv-miR-M1-6-3p
Interactor2: Son

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar