Basic Information:

  VIRBase ID:  

VHID00638013

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-6-3p:  MIMAT0001569          Sema3a:  NM_009152     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mghv-miR-M1-6-3p	Sema3a
miRBase Accession/Entrez ID	MIMAT0001569	20346
Organism	Murid gammaherpesvirus 4 (MuHV-4)	Mus musculus
Category	miRNA	mRNA
Alias	-	col//coll-1//Hsema-I//Sem//SEMA1//Semad//SemD

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Sema3a	chr5:13399123-13399124(+) m6A 5'UTR//intron       24981863//25569111 chr5:13399382-13399383(+) m6A 5'UTR//intron       25683224//24981863 chr5:13399591-13399592(+) m6A 5'UTR//exon//intron       25683224//24981863//25569111 chr5:13399847-13399848(+) m6A 5'UTR//exon//intron       25683224//24981863//25569111 chr5:13399891-13399892(+) m6A 5'UTR//exon       25683224//24981863//25569111//22608085 chr5:13399939-13399940(+) m6A 5'UTR//exon       25683224//24981863//25569111 chr5:13400018-13400019(+) m6A CDS//exon       25683224//24981863//25569111 chr5:13400036-13400037(+) m6A CDS//exon       25683224//24981863//25569111 chr5:13400049-13400050(+) m6A CDS//exon       25683224//24981863//25569111 chr5:13523073-13523074(+) m6A CDS//exon       25683224//22608085 chr5:13523083-13523084(+) m6A CDS//exon       25683224//22608085 chr5:13523098-13523099(+) m6A CDS//exon       25683224//22608085 chr5:13523115-13523116(+) m6A CDS//exon       25683224//22608085 chr5:13523205-13523206(+) m6A exon//intron       25683224//22608085 chr5:13523231-13523232(+) m6A exon//intron       25683224//22608085 chr5:13556624-13556625(+) m6A CDS       25683224//22608085 chr5:13557023-13557024(+) m6A CDS       25683224//22608085 chr5:13557048-13557049(+) m6A CDS       25683224//22608085 chr5:13561905-13561906(+) m6A CDS       25683224//22608085 chr5:13565762-13565763(+) m6A CDS       25683224//22608085 chr5:13565790-13565791(+) m6A CDS       25683224//22608085 chr5:13565882-13565883(+) m6A CDS       25683224//22608085 chr5:13565919-13565920(+) m6A CDS       25683224//22608085 chr5:13565966-13565967(+) m6A CDS       25683224//22608085 chr5:13570153-13570154(+) m6A CDS       25683224//22608085 chr5:13570186-13570187(+) m6A CDS       25683224//22608085 chr5:13577589-13577590(+) m6A CDS       25683224//22608085 chr5:13577625-13577626(+) m6A CDS       25683224//22608085 chr5:13581091-13581092(+) m6A CDS       25683224//22608085 chr5:13585100-13585101(+) m6A CDS       25683224//22608085 chr5:13597550-13597551(+) m6A CDS       25683224//24981863 chr5:13599174-13599175(+) m6A CDS       25683224//24981863//25569111 chr5:13599179-13599180(+) m6A CDS       25683224//24981863//25569111 chr5:13599245-13599246(+) m6A CDS       25683224//24981863//25569111//22608085 chr5:13599261-13599262(+) m6A CDS       25683224//24981863//25569111//22608085 chr5:13599299-13599300(+) m6A CDS       25683224//24981863//25569111//22608085 chr5:13599311-13599312(+) m6A CDS       25683224//24981863//25569111//22608085 chr5:13599400-13599401(+) m6A CDS       25683224//25412662//24981863//25569111//22608085 chr5:13599433-13599434(+) m6A CDS       25683224//25412662//24981863//25569111//22608085 chr5:13599455-13599456(+) m6A CDS       25683224//25412662//24981863//25569111//22608085 chr5:13599472-13599473(+) m6A CDS       25683224//25412662//24981863//25569111//22608085 chr5:13599559-13599560(+) m6A CDS       25683224//25412662//24981863//25569111//22608085 chr5:13599567-13599568(+) m6A CDS       25683224//25412662//24981863//25569111//22608085 chr5:13599621-13599622(+) m6A 3'UTR       25683224//25412662//24981863//25569111//22608085 chr5:13599628-13599629(+) m6A 3'UTR       25683224//25412662//24981863//25569111//22608085 chr5:13599638-13599639(+) m6A 3'UTR       25683224//25412662//24981863//25569111//22608085 chr5:13599679-13599680(+) m6A 3'UTR       25683224//24981863//25412662//25569111//22608085 chr5:13599755-13599756(+) m6A 3'UTR       25683224//25412662//24981863//25569111//22608085 chr5:13599915-13599916(+) m6A 3'UTR       25683224//25412662//24981863//25569111//22608085 chr5:13599960-13599961(+) m6A 3'UTR       25683224//25412662//24981863//25569111//22608085 chr5:13600106-13600107(+) m6A 3'UTR       25683224//24981863//25412662//25569111//22608085 chr5:13600112-13600113(+) m6A 3'UTR       25683224//24981863//25412662//25569111//22608085 chr5:13600527-13600528(+) m6A 3'UTR       25683224//24981863 chr5:13600546-13600547(+) m6A 3'UTR       25683224//24981863 chr5:13600610-13600611(+) m6A 3'UTR       25683224//24981863//25569111 chr5:13600686-13600687(+) m6A 3'UTR       25683224//24981863//25569111 chr5:13600792-13600793(+) m6A 3'UTR       25683224//24981863 chr5:13601475-13601476(+) m6A 3'UTR       25683224//22608085 chr5:13601494-13601495(+) m6A 3'UTR       25683224//22608085

Interaction Network (The top 100 interactions):

Interactor1: mghv-miR-M1-6-3p
Interactor2: Sema3a

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar