Basic Information:

  VIRBase ID:  

VHID00638009

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-6-3p:  MIMAT0001569          Sdf4:  NM_011341     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mghv-miR-M1-6-3p	Sdf4
miRBase Accession/Entrez ID	MIMAT0001569	20318
Organism	Murid gammaherpesvirus 4 (MuHV-4)	Mus musculus
Category	miRNA	mRNA
Alias	-	Cab4//Cab45

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	Sdf4	chr4:155384775(+) A-I      3'UTR chr4:155376923(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	Sdf4	chr4:156010666(+) C-I intron -    22448268 chr4:156002814(+) A-I intron -    22524474 chr4:156010666(+) A-I intron -    22524474

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Sdf4	chr4:155992983-155992984(+) m6A 5'UTR       25412662//25569111 chr4:155993295-155993296(+) m6A 5'UTR       24981863//25569111 chr4:155993312-155993313(+) m6A 5'UTR       24981863//25569111 chr4:155993467-155993468(+) m6A 5'UTR//intron       25569111 chr4:155996302-155996303(+) m6A CDS       25412662//24981863//25569111 chr4:155996370-155996371(+) m6A CDS       25412662//24981863//25569111//26404942 chr4:155996404-155996405(+) m6A CDS       25412662//24981863//25569111//26404942 chr4:155996418-155996419(+) m6A CDS       25412662//24981863//25569111//26404942 chr4:155996448-155996449(+) m6A CDS       25412662//24981863//25569111//26404942 chr4:155996469-155996470(+) m6A CDS       25412662//24981863//25569111 chr4:155999408-155999409(+) m6A CDS       25412662//24981863//25569111 chr4:155999461-155999462(+) m6A CDS//exon       25412662//24981863 chr4:155999495-155999496(+) m6A CDS//exon       24981863//22608085 chr4:155999519-155999520(+) m6A CDS//exon       24981863//22608085 chr4:156000753-156000754(+) m6A CDS//exon       25683224//25412662//22608085 chr4:156000872-156000873(+) m6A exon//intron       25683224//25456834//25412662 chr4:156000909-156000910(+) m6A exon//intron       25683224//25456834//25412662 chr4:156002528-156002529(+) m6A CDS//intron       25683224 chr4:156008804-156008805(+) m6A CDS//exon       25412662//22608085 chr4:156008813-156008814(+) m6A CDS//exon       25412662//22608085 chr4:156008831-156008832(+) m6A CDS//exon       25412662//22608085 chr4:156008846-156008847(+) m6A CDS//exon       25412662//22608085 chr4:156008939-156008940(+) m6A CDS//exon       25412662//25569111//22608085 chr4:156009209-156009210(+) m6A CDS//exon       25683224//25412662//24981863//25569111 chr4:156009224-156009225(+) m6A CDS//exon       25683224//25412662//24981863//25569111 chr4:156009248-156009249(+) m6A CDS//exon       25683224//24981863//25569111 chr4:156009270-156009271(+) m6A CDS//exon       25683224//24981863//25569111//26404942 chr4:156009783-156009784(+) m6A CDS//exon       25683224//25412662//24981863//25569111//26404942//22608085//22575960 chr4:156009820-156009821(+) m6A CDS//exon       25683224//25412662//24981863//25569111//26404942//22608085//22575960 chr4:156009846-156009847(+) m6A CDS//exon       25683224//25412662//24981863//25569111//26404942//22608085//22575960 chr4:156009852-156009853(+) m6A CDS//exon       25683224//25412662//24981863//25569111//26404942//22608085//22575960 chr4:156009918-156009919(+) m6A CDS       25683224//25412662//24981863//25569111//26404942//22608085//22575960 chr4:156010030-156010031(+) m6A 3'UTR       25683224//24981863//25569111//22575960 chr4:156010806-156010807(+) Y 3'UTR//exon       26075521 chr4:156011460-156011461(+) m6A 3'UTR       25683224//22608085 chr4:156011469-156011470(+) m6A 3'UTR       25683224//22608085 chr4:156011626-156011627(+) m6A 3'UTR       25683224//22608085 chr4:156011634-156011635(+) m6A 3'UTR       25683224//22608085 chr4:156011653-156011654(+) m6A 3'UTR       25683224//22608085 chr4:156011687-156011688(+) m6A 3'UTR       25683224//22608085 chr4:156011720-156011721(+) m6A 3'UTR       25683224//22608085 chr4:156011728-156011729(+) m6A 3'UTR       25683224//22608085 chr4:156011787-156011788(+) m6A 3'UTR       25683224//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Sdf4	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mghv-miR-M1-6-3p
Interactor2: Sdf4

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar