Basic Information:

  VIRBase ID:  

VHID00637979

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-6-3p:  MIMAT0001569          Rnf4:  NM_001304270     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mghv-miR-M1-6-3p	Rnf4
miRBase Accession/Entrez ID	MIMAT0001569	19822
Organism	Murid gammaherpesvirus 4 (MuHV-4)	Mus musculus
Category	miRNA	mRNA
Alias	-	AU018689//Gtrge//Gtrgeo8//SNURF

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Rnf4	chr5:34336344-34336345(+) m6A 5'UTR//exon       25683224 chr5:34336528-34336529(+) m6A 5'UTR//exon//intron       25412662//25569111 chr5:34336713-34336714(+) m6A 5'UTR//intron       25569111 chr5:34342562-34342563(+) m6A 5'UTR//exon//intron       25569111//22608085 chr5:34342601-34342602(+) m6A 5'UTR//exon//intron       24981863//25569111//22608085 chr5:34342620-34342621(+) m6A 5'UTR//exon//intron       24981863//22608085 chr5:34346804-34346805(+) m6A CDS//exon       24981863//22608085 chr5:34346818-34346819(+) m6A CDS//exon       24981863//22608085 chr5:34346834-34346835(+) m6A CDS//exon       24981863//22608085 chr5:34346843-34346844(+) m6A CDS//exon       24981863//22608085 chr5:34346873-34346874(+) m6A CDS//exon       24981863//22608085 chr5:34346878-34346879(+) m6A CDS//exon       24981863//22608085 chr5:34346887-34346888(+) m6A CDS//exon       24981863//22608085 chr5:34346897-34346898(+) m6A CDS//exon       24981863//22608085 chr5:34348717-34348718(+) m6A CDS//exon       25412662//22608085 chr5:34349646-34349647(+) m6A exon//intron       25412662//24981863//22608085 chr5:34349693-34349694(+) m6A exon//intron       25412662 chr5:34349834-34349835(+) m6A exon//intron       24981863 chr5:34349953-34349954(+) m6A CDS//exon       24981863//22608085 chr5:34350004-34350005(+) m6A CDS//exon       24981863//22608085 chr5:34351404-34351405(+) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085 chr5:34351412-34351413(+) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085 chr5:34351416-34351417(+) m6A 3'UTR//exon       24981863 chr5:34351474-34351475(+) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085 chr5:34351501-34351502(+) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085 chr5:34351752-34351753(+) m6A 3'UTR//exon       25456834//24981863//25569111//22608085//22575960 chr5:34351794-34351795(+) m6A 3'UTR//exon       25456834//24981863//25569111//22575960 chr5:34351810-34351811(+) m6A 3'UTR//exon       25456834//24981863//25569111//22575960 chr5:34351873-34351874(+) m6A 3'UTR//exon       25456834//24981863//25569111//22575960 chr5:34351925-34351926(+) m6A 3'UTR//exon       25456834//24981863//25569111//22575960 chr5:34352011-34352012(+) m6A 3'UTR//exon       24981863//25569111 chr5:34352135-34352136(+) m6A 3'UTR//exon       25569111//22608085 chr5:34352173-34352174(+) m6A 3'UTR//exon       25569111//22608085 chr5:34352191-34352192(+) m6A 3'UTR//exon       25569111//22608085 chr5:34353080-34353081(+) m6A 3'UTR//exon       24981863//22608085 chr5:34353110-34353111(+) m6A 3'UTR//exon       24981863//22608085 chr5:34353121-34353122(+) m6A 3'UTR//exon       24981863//22608085 chr5:34353274-34353275(+) m6A 3'UTR//exon       25569111

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Rnf4	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mghv-miR-M1-6-3p
Interactor2: Rnf4

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar