Basic Information:

  VIRBase ID:  

VHID00636784

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-5-5p:  MIMAT0001568          Pja2:  NM_144859     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mghv-miR-M1-5-5p	Pja2
miRBase Accession/Entrez ID	MIMAT0001568	224938
Organism	Murid gammaherpesvirus 4 (MuHV-4)	Mus musculus
Category	miRNA	mRNA
Alias	-	AI447901//AL022700//mKIAA0438//Neur//Neurodap1

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Pja2	chr17:64281448-64281449(-) m6A 3'UTR       26404942//22608085 chr17:64281463-64281464(-) m6A 3'UTR       26404942//22608085 chr17:64281479-64281480(-) m6A 3'UTR       26404942//22608085 chr17:64281520-64281521(-) m6A 3'UTR       26404942//22608085 chr17:64282438-64282439(-) m6A 3'UTR       26404942//22608085 chr17:64282454-64282455(-) m6A 3'UTR       26404942//22608085 chr17:64282459-64282460(-) m6A 3'UTR       26404942//22608085 chr17:64282490-64282491(-) m6A 3'UTR       26404942//22608085 chr17:64282775-64282776(-) m6A 3'UTR       24981863 chr17:64282815-64282816(-) m6A 3'UTR       24981863//25569111//26404942 chr17:64282840-64282841(-) m6A 3'UTR       24981863//25569111//26404942 chr17:64282887-64282888(-) m6A 3'UTR       24981863//25569111//26404942 chr17:64282905-64282906(-) m6A 3'UTR       24981863//25569111//26404942 chr17:64282911-64282912(-) m6A 3'UTR       24981863//25569111//26404942 chr17:64282969-64282970(-) m6A 3'UTR       24981863//26404942 chr17:64283023-64283024(-) m6A 3'UTR       24981863 chr17:64283070-64283071(-) m6A 3'UTR       24981863 chr17:64283233-64283234(-) m6A 3'UTR       26404942//22608085 chr17:64283242-64283243(-) m6A 3'UTR       26404942//22608085 chr17:64283257-64283258(-) m6A 3'UTR       26404942//22608085 chr17:64283262-64283263(-) m6A 3'UTR       26404942//22608085 chr17:64283411-64283412(-) m6A 3'UTR       24981863//26404942//22608085 chr17:64283531-64283532(-) m6A CDS       24981863//22608085 chr17:64290019-64290020(-) m6A CDS       25412662//22608085 chr17:64292844-64292845(-) m6A CDS       25412662//22608085 chr17:64292856-64292857(-) m6A CDS       25412662//22608085 chr17:64292892-64292893(-) m6A CDS       25412662//22608085 chr17:64293020-64293021(-) m6A CDS       25683224//24981863//26404942 chr17:64297747-64297748(-) m6A CDS//intron       25683224//24981863 chr17:64297814-64297815(-) m6A CDS//intron       25683224//24981863 chr17:64297843-64297844(-) m6A CDS//intron       25683224//24981863 chr17:64308624-64308625(-) m6A CDS       25683224//25412662//24981863//25569111//26404942 chr17:64308681-64308682(-) m6A CDS       25683224//25412662//24981863//25569111 chr17:64308745-64308746(-) m6A CDS       25683224//25412662//24981863//25569111//26404942 chr17:64308798-64308799(-) m6A CDS       25683224//25412662//24981863//25569111//26404942 chr17:64308924-64308925(-) m6A CDS       25683224//24981863//25569111//26404942 chr17:64308974-64308975(-) m6A CDS       25683224//25412662//24981863//25569111//26404942 chr17:64309041-64309042(-) m6A CDS       25683224//25412662//24981863//25569111 chr17:64309070-64309071(-) m6A CDS       25683224//25412662//24981863//25569111 chr17:64309325-64309326(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942 chr17:64309386-64309387(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr17:64309468-64309469(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr17:64309488-64309489(-) m6A CDS       25412662//24981863//25569111//26404942//22608085 chr17:64309507-64309508(-) m6A CDS       25412662//24981863//25569111 chr17:64309600-64309601(-) m6A CDS       25412662//24981863//25569111 chr17:64309622-64309623(-) m6A CDS       25412662//24981863//25569111 chr17:64311178-64311179(-) m6A CDS       25412662//24981863//22608085 chr17:64311201-64311202(-) m6A CDS       25412662//24981863//22608085 chr17:64311285-64311286(-) m6A CDS       24981863//22608085 chr17:64311314-64311315(-) m6A CDS       24981863//22608085 chr17:64311333-64311334(-) m6A CDS       24981863//22608085 chr17:64313055-64313056(-) m6A 5'UTR       24981863//22608085 chr17:64313081-64313082(-) m6A 5'UTR       24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Pja2	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mghv-miR-M1-5-5p
Interactor2: Pja2

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar