Basic Information:

  VIRBase ID:  

VHID00636735

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-5-5p:  MIMAT0001568          Ckap4:  NM_175451     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mghv-miR-M1-5-5p	Ckap4
miRBase Accession/Entrez ID	MIMAT0001568	216197
Organism	Murid gammaherpesvirus 4 (MuHV-4)	Mus musculus
Category	miRNA	mRNA
Alias	-	5630400A09Rik//CLIMP//CLIMP-63//P6//P63

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Ckap4	chr10:84526329-84526330(-) m6A 3'UTR       24981863 chr10:84526368-84526369(-) m6A 3'UTR       24981863 chr10:84526398-84526399(-) m6A 3'UTR       24981863 chr10:84526419-84526420(-) m6A 3'UTR       24981863 chr10:84526882-84526883(-) m6A 3'UTR       25683224//24981863//25569111 chr10:84526917-84526918(-) m6A 3'UTR       25683224//24981863//25569111 chr10:84526927-84526928(-) m6A 3'UTR       25683224//24981863//25569111 chr10:84527066-84527067(-) m6A 3'UTR       24981863//25456834//25569111 chr10:84527076-84527077(-) m6A 3'UTR       24981863//25456834//25569111 chr10:84527316-84527317(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr10:84527407-84527408(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr10:84527412-84527413(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr10:84527425-84527426(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr10:84527430-84527431(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr10:84527464-84527465(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr10:84527605-84527606(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr10:84527615-84527616(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr10:84527632-84527633(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr10:84527668-84527669(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr10:84527686-84527687(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr10:84527695-84527696(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr10:84527728-84527729(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr10:84527837-84527838(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr10:84527887-84527888(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr10:84528054-84528055(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr10:84528073-84528074(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr10:84528141-84528142(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr10:84528151-84528152(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr10:84528276-84528277(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr10:84528340-84528341(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr10:84528395-84528396(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085 chr10:84528556-84528557(-) m6A CDS       25683224//25412662//24981863//25569111 chr10:84528574-84528575(-) m6A CDS       25683224//25412662//24981863//25569111 chr10:84528714-84528715(-) m6A CDS       25683224//25412662//24981863//25569111//22608085 chr10:84528727-84528728(-) m6A CDS       25683224//24981863//25569111//22608085 chr10:84528749-84528750(-) m6A CDS       24981863//25569111 chr10:84533501-84533502(-) m6A CDS       24981863//25569111 chr10:84533699-84533700(-) m6A CDS       25412662//25569111 chr10:84533763-84533764(-) m1A CDS       26863196 chr10:84533807-84533808(-) m6A CDS       25412662//25569111 chr10:84533851-84533852(-) m6A CDS       25412662//25569111

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Ckap4	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mghv-miR-M1-5-5p
Interactor2: Ckap4

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar