Detail Information

Basic Information:


  VIRBase ID:  

VHID00636381

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-5-5p:           Rab11fip2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mghv-miR-M1-5-5p Rab11fip2
miRBase
Accession/Entrez ID		 MIMAT0001568 74998
Organism Murid gammaherpesvirus 4 (MuHV-4) Mus musculus
Category miRNA mRNA
Alias - 4930470G04Rik//A830046J09Rik//AW558126//nR//Nrip11//Rab11-

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Rab11fip2
chr19:59905804-59905805(-) m6A 3'UTR       24981863
chr19:59905811-59905812(-) m6A 3'UTR       24981863
chr19:59905836-59905837(-) m6A 3'UTR       24981863
chr19:59906214-59906215(-) m6A 3'UTR       24981863
chr19:59906281-59906282(-) m6A 3'UTR//CDS       24981863
chr19:59906353-59906354(-) m6A 3'UTR//intron       24981863//22608085
chr19:59906363-59906364(-) m6A 3'UTR//intron       24981863//22608085
chr19:59906452-59906453(-) m6A 3'UTR//intron       24981863//22608085
chr19:59906466-59906467(-) m6A 3'UTR//intron       24981863//22608085
chr19:59906482-59906483(-) m6A 3'UTR//intron       24981863//25569111//22608085
chr19:59906504-59906505(-) m6A 3'UTR//intron       24981863//25569111//22608085
chr19:59906520-59906521(-) m6A 3'UTR//intron       24981863//25569111//22608085
chr19:59906538-59906539(-) m6A 3'UTR//intron       24981863//25569111//22608085
chr19:59906631-59906632(-) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085
chr19:59906655-59906656(-) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085
chr19:59906714-59906715(-) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085
chr19:59906722-59906723(-) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085
chr19:59906793-59906794(-) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr19:59906900-59906901(-) m6A 3'UTR//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr19:59906980-59906981(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr19:59907018-59907019(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr19:59907042-59907043(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr19:59907059-59907060(-) m6A CDS       25456834//25412662//24981863//25569111//22608085
chr19:59913418-59913419(-) m6A CDS       25456834//24981863//25569111//22608085
chr19:59935677-59935678(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr19:59935686-59935687(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr19:59935743-59935744(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr19:59935757-59935758(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr19:59935847-59935848(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr19:59935872-59935873(-) m6A CDS       25683224//25456834//24981863//25569111//22608085
chr19:59935973-59935974(-) m6A CDS       25456834//24981863//25569111//22608085
chr19:59935988-59935989(-) m6A CDS       25456834//24981863//25569111//22608085
chr19:59936019-59936020(-) m6A CDS       25456834//24981863//25569111//22608085
chr19:59936047-59936048(-) m6A CDS       25456834//24981863//25569111//22608085
chr19:59937310-59937311(-) m6A CDS       25412662//24981863//25569111
chr19:59937349-59937350(-) m6A CDS       25412662//24981863//25569111
chr19:59937388-59937389(-) m6A 5'UTR//CDS       24981863//25569111
chr19:59937408-59937409(-) m6A 5'UTR//CDS       24981863//25569111
chr19:59942651-59942652(-) m6A CDS//intron       24981863//25569111
chr19:59942668-59942669(-) m6A CDS//intron       24981863//25569111
chr19:59942721-59942722(-) m6A CDS//intron       24981863//25569111
chr19:59942837-59942838(-) m6A CDS//intron       25412662//24981863//25569111
chr19:59943006-59943007(-) m6A 5'UTR//intron       25683224//25456834//24981863//25412662//25569111//22608085
chr19:59943013-59943014(-) m6A 5'UTR//intron       25683224//25456834//24981863//25412662//25569111//22608085
chr19:59943018-59943019(-) m6A 5'UTR//intron       25683224//25456834//24981863//25412662//25569111//22608085
chr19:59943023-59943024(-) m6A 5'UTR//intron       25683224//25456834//24981863//25412662//25569111//22608085
chr19:59943031-59943032(-) m6A 5'UTR//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr19:59943036-59943037(-) m6A 5'UTR//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr19:59943052-59943053(-) m6A 5'UTR//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr19:59943057-59943058(-) m6A 5'UTR//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr19:59943073-59943074(-) m6A 5'UTR//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr19:59943178-59943179(-) m6A 5'UTR//intron       25683224//25412662//24981863//25569111//22608085
chr19:59943233-59943234(-) m6A 5'UTR//intron       25683224//25412662//24981863//25569111//22608085

Interaction Network (The top 100 interactions):


Interactor1: mghv-miR-M1-5-5p
Interactor2: Rab11fip2

Evidence Support:


Prediction-Evidence cRep//Rep
Support Database RepTar

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