Basic Information:

  VIRBase ID:  

VHID00636291

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-5-5p:  MIMAT0001568          Fndc3b:  NM_001356953     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mghv-miR-M1-5-5p	Fndc3b
miRBase Accession/Entrez ID	MIMAT0001568	72007
Organism	Murid gammaherpesvirus 4 (MuHV-4)	Mus musculus
Category	miRNA	mRNA
Alias	-	1600019O04Rik//AW550168//fad10//Fad104//mKIAA4164

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Fndc3b	chr3:27419041-27419042(-) m6A 3'UTR       24981863 chr3:27419094-27419095(-) m6A 3'UTR       24981863//25569111 chr3:27419111-27419112(-) m6A 3'UTR       24981863//25569111 chr3:27419127-27419128(-) m6A 3'UTR       24981863//25569111 chr3:27419374-27419375(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22575960 chr3:27419426-27419427(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22575960 chr3:27419507-27419508(-) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr3:27426049-27426050(-) m6A CDS       25683224//24981863//25412662//25569111 chr3:27428908-27428909(-) m6A CDS       25683224//25569111 chr3:27428981-27428982(-) m6A CDS       25683224//25569111 chr3:27429008-27429009(-) m6A CDS       25683224//25569111 chr3:27439963-27439964(-) m6A CDS       25569111 chr3:27451337-27451338(-) m6A CDS       25569111 chr3:27451382-27451383(-) m6A CDS       25569111 chr3:27451442-27451443(-) m6A CDS       24981863//25569111 chr3:27451469-27451470(-) m6A CDS       24981863//25569111 chr3:27451542-27451543(-) m6A CDS       24981863//25569111 chr3:27458757-27458758(-) m6A CDS       25683224 chr3:27458830-27458831(-) m6A CDS       25683224 chr3:27508486-27508487(-) m6A CDS//exon       25683224//24981863 chr3:27508508-27508509(-) m6A CDS//exon       25683224//25412662//24981863 chr3:27537999-27538000(-) m6A CDS//exon//intron       25683224//25412662//24981863//25456834 chr3:27538015-27538016(-) m6A CDS//exon//intron       25683224//25412662//24981863//25456834 chr3:27538100-27538101(-) m6A CDS//exon//intron       25412662//24981863 chr3:27538136-27538137(-) m6A CDS//exon//intron       25412662//24981863 chr3:27538157-27538158(-) m6A CDS//exon//intron       24981863//25569111 chr3:27538193-27538194(-) m6A CDS//exon//intron       24981863//25569111 chr3:27542031-27542032(-) m6A CDS//exon//intron       25412662//24981863//25569111 chr3:27542163-27542164(-) m6A CDS//exon//intron       25412662 chr3:27682767-27682768(-) m6A 5'UTR//intron       25683224//25412662//24981863//25569111 chr3:27682810-27682811(-) m6A 5'UTR//intron       25683224//25412662//24981863//25569111 chr3:27711283-27711284(-) m6A exon       25412662//24981863//25569111

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Fndc3b	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mghv-miR-M1-5-5p
Interactor2: Fndc3b

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar