Basic Information:

  VIRBase ID:  

VHID00635485

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-5-5p:  MIMAT0001568          Gfra1:  NR_104342     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mghv-miR-M1-5-5p	Gfra1
miRBase Accession/Entrez ID	MIMAT0001568	14585
Organism	Murid gammaherpesvirus 4 (MuHV-4)	Mus musculus
Category	miRNA	mRNA
Alias	-	AU042498//GDNFR//GFRalpha-1

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Gfra1	chr19:58235610-58235611(-) m6A 3'UTR       24981863//22608085 chr19:58235632-58235633(-) m6A 3'UTR       24981863//22608085 chr19:58235701-58235702(-) m6A 3'UTR       25683224//24981863//25412662//25569111//22608085//22575960 chr19:58235809-58235810(-) m6A 3'UTR       25683224//25412662//24981863//25569111//26404942//22575960 chr19:58235921-58235922(-) m6A 3'UTR       25683224//25412662//24981863//25569111//26404942//22575960 chr19:58236004-58236005(-) m6A 3'UTR       25683224//24981863//25569111//22608085//22575960 chr19:58236012-58236013(-) m6A 3'UTR       25683224//24981863//25569111//22608085//22575960 chr19:58236018-58236019(-) m6A 3'UTR       25683224//24981863//25569111//22608085//22575960 chr19:58236086-58236087(-) m6A 3'UTR       25683224//24981863//25569111//26404942//22608085 chr19:58236108-58236109(-) m6A 3'UTR       25683224//24981863//25569111//26404942//22608085 chr19:58236121-58236122(-) m6A 3'UTR       25683224//24981863//25569111//26404942//22608085 chr19:58236154-58236155(-) m6A 3'UTR       25683224//24981863//25569111//26404942//22608085 chr19:58236240-58236241(-) m6A 3'UTR       25683224//24981863//25569111//22608085 chr19:58236268-58236269(-) m6A 3'UTR       25683224//24981863//25569111//22608085 chr19:58236280-58236281(-) m6A 3'UTR       25683224//24981863//25569111//22608085 chr19:58236305-58236306(-) m6A 3'UTR       25683224//24981863//25569111//26404942//22608085 chr19:58236472-58236473(-) m6A 3'UTR       24981863 chr19:58236496-58236497(-) m6A 3'UTR       24981863 chr19:58236515-58236516(-) m6A 3'UTR       24981863 chr19:58236532-58236533(-) m6A 3'UTR       24981863 chr19:58236942-58236943(-) m6A 3'UTR       25683224//24981863 chr19:58236985-58236986(-) m6A 3'UTR       25683224//24981863 chr19:58237032-58237033(-) m6A 3'UTR       25683224//24981863 chr19:58237843-58237844(-) m6A 3'UTR       25683224//24981863//25569111//26404942//22608085//22575960 chr19:58237914-58237915(-) m6A 3'UTR       25683224//24981863//25412662//25569111//26404942//22608085//22575960 chr19:58237923-58237924(-) m6A 3'UTR       25683224//24981863//25412662//25569111//26404942//22608085//22575960 chr19:58237979-58237980(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr19:58238065-58238066(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr19:58238143-58238144(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr19:58238159-58238160(-) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085//22575960 chr19:58238187-58238188(-) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085//22575960 chr19:58238196-58238197(-) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085//22575960 chr19:58238218-58238219(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr19:58238275-58238276(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr19:58238360-58238361(-) m6A 3'UTR       25683224//24981863//25569111//22608085//22575960 chr19:58238370-58238371(-) m6A 3'UTR       25683224//24981863//25569111//22608085//22575960 chr19:58238398-58238399(-) m6A 3'UTR//CDS       25683224//25569111//22608085//22575960 chr19:58257742-58257743(-) m6A 3'UTR//intron       25683224//22608085 chr19:58270060-58270061(-) m6A CDS       25683224//22608085 chr19:58270082-58270083(-) m6A CDS       25683224//22608085 chr19:58270091-58270092(-) m6A CDS       25683224//22608085 chr19:58300556-58300557(-) m6A CDS       25683224//22608085 chr19:58453325-58453326(-) m6A CDS       25683224//25412662 chr19:58453380-58453381(-) m6A CDS       25683224//25412662//25569111 chr19:58453414-58453415(-) m6A CDS       25683224//25412662//24981863//25569111 chr19:58453423-58453424(-) m6A CDS       25683224//25412662//24981863//25569111 chr19:58454367-58454368(-) m6A 5'UTR       25683224//25412662//24981863//25569111 chr19:58454577-58454578(-) m6A 5'UTR       25683224//25412662//24981863//25569111 chr19:58454582-58454583(-) m6A 5'UTR       25683224//25412662//24981863//25569111

Interaction Network (The top 100 interactions):

Interactor1: mghv-miR-M1-5-5p
Interactor2: Gfra1

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar