Basic Information:

  VIRBase ID:  

VHID00635213

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-4-5p:  MIMAT0001567          Depdc1b:  NM_178683     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mghv-miR-M1-4-5p	Depdc1b
miRBase Accession/Entrez ID	MIMAT0001567	218581
Organism	Murid gammaherpesvirus 4 (MuHV-4)	Mus musculus
Category	miRNA	mRNA
Alias	-	9830132O03//AW260467//XTP//XTP1

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Depdc1b	chr13:108316354-108316355(+) m6A 5'UTR       25569111 chr13:108316441-108316442(+) m6A CDS//exon       25569111 chr13:108323914-108323915(+) m6A CDS//exon       25683224//25569111 chr13:108323952-108323953(+) m6A CDS//exon       25683224//25456834//24981863//25569111 chr13:108324008-108324009(+) m6A CDS//exon       25683224//25456834//24981863//25569111 chr13:108324032-108324033(+) m6A CDS//exon       25683224//25456834//24981863//25569111 chr13:108324041-108324042(+) m6A CDS//exon       25683224//25456834//24981863//25569111 chr13:108324066-108324067(+) m6A CDS//exon       25683224//25456834//24981863//25569111 chr13:108324116-108324117(+) m6A CDS//exon       25683224//25456834//24981863//25569111 chr13:108324152-108324153(+) m6A CDS//exon       25456834//24981863//25569111 chr13:108324188-108324189(+) m6A exon//intron       25456834//24981863 chr13:108324202-108324203(+) m6A exon//intron       25456834//24981863 chr13:108324240-108324241(+) m6A exon//intron       25456834//24981863 chr13:108388617-108388618(+) m6A CDS       25683224//24981863//25569111 chr13:108388681-108388682(+) m6A CDS       25683224//25456834//24981863//25569111 chr13:108388723-108388724(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr13:108388738-108388739(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr13:108388777-108388778(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr13:108388925-108388926(+) m6A 3'UTR//intron       24981863//25569111

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Depdc1b	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mghv-miR-M1-4-5p
Interactor2: Depdc1b

Evidence Support:

Prediction-Evidence	Rep
Support Database	RepTar