Detail Information

Basic Information:


  VIRBase ID:  

VHID00634657

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-3-3p:           Fam155a:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mghv-miR-M1-3-3p Fam155a
miRBase
Accession/Entrez ID		 MIMAT0001566 270028
Organism Murid gammaherpesvirus 4 (MuHV-4) Mus musculus
Category miRNA mRNA
Alias - 6430500D16//AW121567//Tmem28

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR Fam155a
chr8:9706978(-) A-I      intronic
chr8:9706940(-) A-I      intronic
chr8:9706909(-) A-I      intronic
chr8:9706888(-) A-I      intronic
chr8:9706887(-) A-I      intronic
chr8:9706987(-) A-I      intronic
chr8:9706961(-) A-I      intronic
chr8:9706905(-) A-I      intronic
chr8:9507653(-) A-I      intronic
chr8:9706866(-) A-I      intronic
chr8:9706950(-) A-I      intronic
chr8:9706879(-) A-I      intronic
chr8:9706903(-) A-I      intronic
chr8:9706941(-) A-I      intronic
chr8:9706939(-) A-I      intronic
chr8:9706951(-) A-I      intronic
chr8:9706921(-) A-I      intronic
chr8:9515517(-) A-I      intronic
chr8:9706893(-) A-I      intronic
chr8:9706934(-) A-I      intronic
chr8:9706914(-) A-I      intronic
chr8:9613540(-) A-I      intronic
chr8:9706889(-) A-I      intronic
chr8:9706906(-) A-I      intronic
chr8:9706947(-) A-I      intronic
chr8:9515591(-) A-I      intronic
chr8:9706919(-) A-I      intronic
chr8:9706976(-) A-I      intronic
chr8:9706946(-) A-I      intronic
chr8:9706883(-) A-I      intronic
chr8:9706975(-) A-I      intronic
chr8:9706875(-) A-I      intronic
chr8:9652099(-) A-I      intronic
chr8:9706876(-) A-I      intronic
chr8:9706952(-) A-I      intronic
chr8:9706967(-) A-I      intronic
chr8:9507662(-) A-I      intronic
chr8:9706977(-) A-I      intronic
chr8:9706861(-) A-I      intronic
chr8:9706944(-) A-I      intronic
chr8:9462396(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED Fam155a
chr8:9462396(-) A-I intron -    22524474
chr8:9507653(-) A-I intron -    22524474
chr8:9507662(-) A-I intron -    22524474
chr8:9515517(-) A-I intron -    22524474
chr8:9515591(-) A-I intron -    22524474
chr8:9652099(-) A-I intron -    22524474
chr8:9706861(-) A-I intron -    22524474
chr8:9706866(-) A-I intron -    22524474
chr8:9706875(-) A-I intron -    22524474
chr8:9706876(-) A-I intron -    22524474
chr8:9706879(-) A-I intron -    22524474
chr8:9706883(-) A-I intron -    22524474
chr8:9706887(-) A-I intron -    22524474
chr8:9706888(-) A-I intron -    22524474
chr8:9706889(-) A-I intron -    22524474
chr8:9706893(-) A-I intron -    22524474
chr8:9706903(-) A-I intron -    22524474
chr8:9706905(-) A-I intron -    22524474
chr8:9706906(-) A-I intron -    22524474
chr8:9706909(-) A-I intron -    22524474
chr8:9706914(-) A-I intron -    22524474
chr8:9706919(-) A-I intron -    22524474
chr8:9706921(-) A-I intron -    22524474
chr8:9706934(-) A-I intron -    22524474
chr8:9706939(-) A-I intron -    22524474
chr8:9706940(-) A-I intron -    22524474
chr8:9706941(-) A-I intron -    22524474
chr8:9706944(-) A-I intron -    22524474
chr8:9706946(-) A-I intron -    22524474
chr8:9706947(-) A-I intron -    22524474
chr8:9706950(-) A-I intron -    22524474
chr8:9706951(-) A-I intron -    22524474
chr8:9706952(-) A-I intron -    22524474
chr8:9706961(-) A-I intron -    22524474
chr8:9706967(-) A-I intron -    22524474
chr8:9706975(-) A-I intron -    22524474
chr8:9706976(-) A-I intron -    22524474
chr8:9706977(-) A-I intron -    22524474
chr8:9706978(-) A-I intron -    22524474
chr8:9706987(-) A-I intron -    22524474

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Fam155a
chr8:9207088-9207089(-) m6A 3'UTR       24981863//22608085
chr8:9207190-9207191(-) m6A 3'UTR       24981863//22608085
chr8:9207204-9207205(-) m6A 3'UTR       24981863//22608085
chr8:9207216-9207217(-) m6A 3'UTR       24981863//22608085
chr8:9207247-9207248(-) m6A 3'UTR//exon       22608085
chr8:9207551-9207552(-) m6A 3'UTR//exon       25683224//24981863//22608085
chr8:9207608-9207609(-) m6A 3'UTR//exon       25683224//24981863//22608085
chr8:9207633-9207634(-) m6A 3'UTR//exon       25683224//24981863//22608085
chr8:9207638-9207639(-) m6A 3'UTR//exon       25683224//24981863//22608085
chr8:9207700-9207701(-) m6A 3'UTR//exon       25683224//24981863//22608085
chr8:9207746-9207747(-) m6A 3'UTR//CDS//exon       25683224//24981863//22608085
chr8:9207764-9207765(-) m6A 3'UTR//CDS//exon       25683224//24981863//22608085
chr8:9207796-9207797(-) m6A 3'UTR//CDS//exon       25683224//24981863//22608085
chr8:9207806-9207807(-) m6A 3'UTR//CDS//exon       25683224//24981863//22608085
chr8:9207886-9207887(-) m6A 3'UTR//CDS//exon       25683224//24981863//22608085
chr8:9207915-9207916(-) m6A 3'UTR//CDS//exon       25683224//24981863//22608085
chr8:9207929-9207930(-) m6A 3'UTR//CDS//exon       25683224//24981863//22608085
chr8:9207938-9207939(-) m6A 3'UTR//CDS//exon       25683224//24981863//22608085
chr8:9207945-9207946(-) m6A 3'UTR//CDS//exon       25683224//24981863//26404942//22608085
chr8:9207955-9207956(-) m6A 3'UTR//CDS//exon       25683224//24981863//26404942//22608085
chr8:9207966-9207967(-) m6A 3'UTR//CDS//exon       25683224//24981863//26404942//22608085
chr8:9208000-9208001(-) m6A 3'UTR//CDS//exon       24981863//26404942//22608085
chr8:9208020-9208021(-) m6A 3'UTR//CDS//exon       24981863//26404942//22608085
chr8:9233041-9233042(-) m6A CDS//exon       24981863
chr8:9321534-9321535(-) m6A exon//intron       24981863
chr8:9574773-9574774(-) m6A CDS//intron       24981863//22608085
chr8:9659044-9659045(-) m6A intron       22608085
chr8:9659052-9659053(-) m6A intron       22608085
chr8:9659085-9659086(-) m6A intron       22608085
chr8:9659091-9659092(-) m6A intron       22608085
chr8:9659103-9659104(-) m6A intron       22608085
chr8:9659136-9659137(-) m6A intron       22608085
chr8:9659144-9659145(-) m6A intron       22608085
chr8:9659209-9659210(-) m6A intron       22608085
chr8:9770083-9770084(-) m6A CDS       24981863//22608085
chr8:9770182-9770183(-) m6A CDS       25683224//24981863//22608085
chr8:9770205-9770206(-) m6A CDS       25683224//24981863//22608085
chr8:9770257-9770258(-) m6A CDS       25683224//24981863//22608085
chr8:9770341-9770342(-) m6A CDS       25683224//24981863//22608085
chr8:9770410-9770411(-) m6A CDS       24981863//22608085
chr8:9770483-9770484(-) m6A CDS       24981863//22608085
chr8:9770512-9770513(-) m6A CDS       24981863//22608085
chr8:9770542-9770543(-) m6A CDS       25683224//24981863//22608085
chr8:9770622-9770623(-) m6A CDS       25683224//24981863//22608085
chr8:9770937-9770938(-) m6A CDS       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Fam155a
Exosome Mast cells     17486113

Interaction Network (The top 100 interactions):


Interactor1: mghv-miR-M1-3-3p
Interactor2: Fam155a

Evidence Support:


Prediction-Evidence cRep//Rep
Support Database RepTar

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