Detail Information

Basic Information:


  VIRBase ID:  

VHID00634598

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-3-3p:           Atg9a:      

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Interactor Information:


Interactor1 Interactor2
Symbol mghv-miR-M1-3-3p Atg9a
miRBase
Accession/Entrez ID		 MIMAT0001566 245860
Organism Murid gammaherpesvirus 4 (MuHV-4) Mus musculus
Category miRNA mRNA
Alias - Apg//Apg9l1//Atg9//Atg9l1//AU019532

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Atg9a
chr1:75180962-75180963(-) m6A 3'UTR       24981863
chr1:75181064-75181065(-) m6A 3'UTR       24981863
chr1:75181501-75181502(-) m6A 3'UTR       25683224//25412662//24981863//25456834//25569111
chr1:75181540-75181541(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111
chr1:75181577-75181578(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:75181674-75181675(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:75181704-75181705(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:75181740-75181741(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:75181845-75181846(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22575960
chr1:75181966-75181967(-) m6A 3'UTR//intron       25412662
chr1:75182612-75182613(-) m6A 3'UTR//CDS       25412662//24981863//25569111//22608085
chr1:75182941-75182942(-) m6A 3'UTR//CDS       25683224//25412662//24981863//22608085
chr1:75183100-75183101(-) m6A 3'UTR//CDS       25683224//25412662//22608085
chr1:75184527-75184528(-) m6A 3'UTR//CDS//intron       25412662//22608085
chr1:75184559-75184560(-) m6A 3'UTR//CDS//intron       25412662//22608085
chr1:75185243-75185244(-) m6A 3'UTR//CDS       25412662//22608085
chr1:75186680-75186681(-) m6A 3'UTR//CDS       25456834//24981863//25569111
chr1:75186783-75186784(-) m6A 3'UTR//CDS       25412662//24981863//25569111
chr1:75186804-75186805(-) m6A 3'UTR//CDS       25412662//24981863//25569111
chr1:75186834-75186835(-) m6A 3'UTR//CDS       25412662//24981863//25569111//22608085
chr1:75190420-75190421(-) m6A 5'UTR//exon       24981863//22608085
chr1:75190837-75190838(-) m6A 5'UTR//exon       24981863//25569111//22608085
chr1:75190854-75190855(-) m6A 5'UTR//exon       24981863//25569111//22608085
chr1:75191546-75191547(-) m6A 5'UTR//exon//intron       25412662//24981863//25569111
chr1:75191863-75191864(-) m6A 5'UTR//exon       25683224//25412662//24981863//25569111//22608085
chr1:75191938-75191939(-) m6A 5'UTR//exon       25683224//25412662//24981863//25569111//22608085
chr1:75192007-75192008(-) m6A 5'UTR       25683224//25412662//24981863//25569111
chr1:75192086-75192087(-) m6A 5'UTR       25456834//24981863//25569111
chr1:75192155-75192156(-) m6A 5'UTR       25456834//24981863//25569111

Interaction Network (The top 100 interactions):


Interactor1: mghv-miR-M1-3-3p
Interactor2: Atg9a

Evidence Support:


Prediction-Evidence cRep//Rep
Support Database RepTar

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