Detail Information

Basic Information:


  VIRBase ID:  

VHID00634528

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-3-3p:           Fam78a:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mghv-miR-M1-3-3p Fam78a
miRBase
Accession/Entrez ID		 MIMAT0001566 241303
Organism Murid gammaherpesvirus 4 (MuHV-4) Mus musculus
Category miRNA mRNA
Alias - A130092J06Rik

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Fam78a
chr2:32051009-32051010(-) m6A intron       25683224
chr2:32051075-32051076(-) m6A 3'UTR       25683224
chr2:32051081-32051082(-) m6A 3'UTR       25683224
chr2:32051129-32051130(-) m6A 3'UTR       25683224
chr2:32051161-32051162(-) m6A 3'UTR       25683224
chr2:32051188-32051189(-) m6A 3'UTR       25683224
chr2:32051210-32051211(-) m6A 3'UTR       25683224
chr2:32052042-32052043(-) m6A 3'UTR       25683224//25456834
chr2:32052123-32052124(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111
chr2:32052175-32052176(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111
chr2:32064007-32064008(-) m6A intron       25683224//25456834//25412662//24981863//25569111
chr2:32064028-32064029(-) m6A intron       25683224//25456834//25412662//24981863//25569111
chr2:32064051-32064052(-) m6A intron       25683224//25456834//25412662//24981863//25569111
chr2:32066932-32066933(-) m6A 3'UTR//intron       25683224//25412662//24981863//25456834//25569111
chr2:32066946-32066947(-) m6A 3'UTR//intron       25683224//25412662//24981863//25456834//25569111
chr2:32066956-32066957(-) m6A 3'UTR//intron       25683224//25412662//24981863//25456834//25569111
chr2:32066987-32066988(-) m6A 3'UTR//intron       25412662//24981863//25456834
chr2:32066993-32066994(-) m6A 3'UTR//intron       25412662//24981863//25456834
chr2:32067005-32067006(-) m6A 3'UTR//intron       25412662//24981863//25456834
chr2:32067051-32067052(-) m6A 3'UTR//intron       24981863
chr2:32068578-32068579(-) m6A 3'UTR//intron       25683224//24981863
chr2:32068612-32068613(-) m6A 3'UTR//intron       25683224//24981863
chr2:32068619-32068620(-) m6A 3'UTR//intron       25683224//24981863
chr2:32068656-32068657(-) m6A 3'UTR//intron       25683224//25456834//24981863
chr2:32068716-32068717(-) m6A 3'UTR//intron       25683224//25456834//24981863//25569111
chr2:32068762-32068763(-) m6A 3'UTR//intron       25683224//25456834//24981863//25569111
chr2:32068794-32068795(-) m6A 3'UTR//intron       25683224//25456834//24981863//25569111
chr2:32068830-32068831(-) m6A 3'UTR//intron       25683224//25456834//24981863//25569111
chr2:32068844-32068845(-) m6A 3'UTR//intron       25683224//25456834//24981863//25569111
chr2:32068903-32068904(-) m6A 3'UTR//intron       25683224//25456834//24981863
chr2:32068974-32068975(-) m6A 3'UTR//intron       25683224//25456834//24981863
chr2:32069051-32069052(-) m6A 3'UTR//intron       25683224//25456834//24981863
chr2:32069108-32069109(-) m6A 3'UTR//intron       25683224//25456834//24981863
chr2:32069184-32069185(-) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085
chr2:32069220-32069221(-) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085
chr2:32069292-32069293(-) m6A CDS       25683224//25456834//24981863//25569111
chr2:32069383-32069384(-) m6A CDS       25683224//25456834//24981863//25569111
chr2:32069474-32069475(-) m6A CDS//exon       25683224//25456834//24981863//25569111
chr2:32069539-32069540(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr2:32069559-32069560(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr2:32069644-32069645(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr2:32069675-32069676(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr2:32069704-32069705(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr2:32079204-32079205(-) m6A exon//intron       25683224//25456834//24981863
chr2:32079308-32079309(-) m6A exon//intron       25683224//24981863
chr2:32082653-32082654(-) m6A CDS       25683224//24981863
chr2:32082710-32082711(-) m6A CDS       25683224//24981863
chr2:32082886-32082887(-) m6A CDS       25683224//25456834//24981863
chr2:32083007-32083008(-) m6A 5'UTR       25683224//25456834//24981863//25569111
chr2:32083026-32083027(-) m6A 5'UTR       25456834//24981863//25569111//22608085
chr2:32083044-32083045(-) m6A 5'UTR       25456834//24981863//25569111//22608085
chr2:32083114-32083115(-) m6A 5'UTR       25456834//24981863//25569111//22608085
chr2:32083130-32083131(-) m6A 5'UTR       25456834//24981863//25569111//22608085
chr2:32083137-32083138(-) m6A 5'UTR       25456834//24981863//25569111//22608085
chr2:32083154-32083155(-) m6A 5'UTR       25456834//24981863//25569111//22608085
chr2:32083219-32083220(-) m6A 5'UTR       25456834//24981863//25569111
chr2:32083272-32083273(-) m6A 5'UTR//exon       25456834//24981863//25569111
chr2:32083413-32083414(-) m6A 5'UTR//exon       24981863//25569111
chr2:32083484-32083485(-) m6A 5'UTR//exon       24981863//25569111
chr2:32083733-32083734(-) m6A 5'UTR//intron       24981863
chr2:32084249-32084250(-) m6A 5'UTR//intron       24981863
chr2:32084305-32084306(-) m6A 5'UTR//intron       24981863
chr2:32084329-32084330(-) m6A 5'UTR//intron       24981863
chr2:32084586-32084587(-) m6A 5'UTR//intron       24981863
chr2:32084598-32084599(-) m6A 5'UTR//intron       24981863
chr2:32084611-32084612(-) m6A 5'UTR//intron       24981863

Interaction Network (The top 100 interactions):


Interactor1: mghv-miR-M1-3-3p
Interactor2: Fam78a

Evidence Support:


Prediction-Evidence cRep//Rep
Support Database RepTar

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