Basic Information:

  VIRBase ID:  

VHID00634385

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-3-3p:  MIMAT0001566          Sh2d5:  NM_001099631     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mghv-miR-M1-3-3p	Sh2d5
miRBase Accession/Entrez ID	MIMAT0001566	230863
Organism	Murid gammaherpesvirus 4 (MuHV-4)	Mus musculus
Category	miRNA	mRNA
Alias	-	BC036961

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	Sh2d5	chr4:137814608(+) A-I      intronic chr4:137815945(+) A-I      3'UTR chr4:137816042(+) A-I      3'UTR chr4:137815958(+) A-I      3'UTR chr4:137815992(+) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	Sh2d5	chr4:138258693(+) A-I intron -    22524474 chr4:138260030(+) A-I intron -    22524474 chr4:138260043(+) A-I intron -    22524474 chr4:138260077(+) A-I intron -    22524474 chr4:138260127(+) A-I intron -    22524474

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Sh2d5	chr4:138250482-138250483(+) m6A 5'UTR//exon       24981863 chr4:138258265-138258266(+) m6A CDS//exon       25456834//24981863 chr4:138258302-138258303(+) m6A CDS//exon       25456834//24981863 chr4:138259171-138259172(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr4:138259179-138259180(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr4:138259200-138259201(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr4:138259258-138259259(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr4:138259345-138259346(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr4:138259430-138259431(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr4:138259442-138259443(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr4:138259449-138259450(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr4:138259555-138259556(+) m6A 3'UTR       25456834//25412662//24981863//25569111//22608085 chr4:138259609-138259610(+) m6A 3'UTR       25456834//25412662//24981863//25569111//22608085 chr4:138259698-138259699(+) m6A 3'UTR       24981863//22608085 chr4:138259713-138259714(+) m6A 3'UTR       24981863//22608085 chr4:138259832-138259833(+) m6A 3'UTR       24981863 chr4:138259899-138259900(+) m6A 3'UTR       25456834//24981863//22608085 chr4:138259999-138260000(+) m6A 3'UTR       25456834//24981863//25569111//22608085 chr4:138260108-138260109(+) m6A 3'UTR       25456834//24981863//25569111//22608085 chr4:138260130-138260131(+) m6A 3'UTR       25456834//24981863//25569111//22608085 chr4:138260165-138260166(+) m6A 3'UTR       25456834//24981863 chr4:138260171-138260172(+) m6A 3'UTR       25456834//24981863 chr4:138260177-138260178(+) m6A 3'UTR       25456834//24981863 chr4:138260318-138260319(+) m6A 3'UTR       25683224//24981863 chr4:138260329-138260330(+) m6A 3'UTR       25683224//24981863 chr4:138260430-138260431(+) m6A 3'UTR       25683224

Interaction Network (The top 100 interactions):

Interactor1: mghv-miR-M1-3-3p
Interactor2: Sh2d5

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar