Basic Information:

  VIRBase ID:  

VHID00633933

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-3-3p:  MIMAT0001566          Chd4:  NM_001346610     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mghv-miR-M1-3-3p	Chd4
miRBase Accession/Entrez ID	MIMAT0001566	107932
Organism	Murid gammaherpesvirus 4 (MuHV-4)	Mus musculus
Category	miRNA	mRNA
Alias	-	9530019N15Rik//AA617397//BC005710//D6Ertd380//D6Ertd380e//Mi-2be//Mi-2beta//mKIAA4075

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	Chd4	chr6:125076246(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	Chd4	chr6:125126228(+) A-I intron -    22524474

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Chd4	chr6:125096232-125096233(+) m6A 5'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr6:125096610-125096611(+) m6A 5'UTR//intron       25683224//25456834//25412662//24981863//25569111//22608085 chr6:125096664-125096665(+) m6A 5'UTR//intron       25683224//25412662//24981863//25569111 chr6:125096683-125096684(+) m6A 5'UTR//intron       25683224//25412662//24981863//25569111 chr6:125096713-125096714(+) m6A 5'UTR//intron       25683224//25412662//24981863 chr6:125096819-125096820(+) m6A 5'UTR//intron       25683224//25412662//25569111 chr6:125097046-125097047(+) m6A 5'UTR//intron       25412662//24981863//25569111 chr6:125097238-125097239(+) m6A CDS//exon       25683224//25412662//24981863//25569111 chr6:125097318-125097319(+) m6A exon//intron       25683224//25412662//24981863//25569111 chr6:125097362-125097363(+) m6A exon//intron       25683224//25412662//24981863//25569111 chr6:125100479-125100480(+) m6A CDS       25683224//25412662//24981863//25569111 chr6:125100508-125100509(+) m6A CDS       25683224//25412662//24981863//25569111 chr6:125100526-125100527(+) m1A CDS       26863196 chr6:125100543-125100544(+) m6A CDS       25683224//25412662//24981863//25569111 chr6:125100551-125100552(+) m6A CDS       25683224//25412662//24981863//25569111 chr6:125100805-125100806(+) m6A CDS       25683224//25412662//24981863//25569111 chr6:125100865-125100866(+) m6A CDS       25683224//25412662//24981863//25456834//25569111//22608085 chr6:125100900-125100901(+) m1A CDS       26863196 chr6:125100917-125100918(+) m6A CDS       25683224//25412662//24981863//25456834 chr6:125100933-125100934(+) m1A CDS       26863196 chr6:125101219-125101220(+) m6A CDS       25683224//25412662//24981863//25456834 chr6:125101248-125101249(+) m6A CDS       25683224//25412662//24981863//25456834 chr6:125101263-125101264(+) m6A CDS       25683224//24981863 chr6:125101298-125101299(+) m6A CDS       24981863//22608085 chr6:125101678-125101679(+) m6A CDS       25683224//22608085 chr6:125101942-125101943(+) m6A CDS       25683224//22608085 chr6:125102269-125102270(+) m6A CDS       25683224//22608085 chr6:125102276-125102277(+) m6A CDS       25683224//22608085 chr6:125102466-125102467(+) m6A CDS//intron       25683224//25412662//22608085 chr6:125102479-125102480(+) m6A CDS       25683224//25412662//22608085 chr6:125102560-125102561(+) m6A CDS       25683224//25412662//24981863//22608085 chr6:125102566-125102567(+) m6A CDS       25683224//25412662//24981863//22608085 chr6:125102826-125102827(+) m6A CDS       25683224//25412662//24981863//22608085 chr6:125102856-125102857(+) m1A CDS       26863196 chr6:125102868-125102869(+) m6A CDS       25683224//25412662//24981863 chr6:125102979-125102980(+) m6A CDS       25683224//25412662 chr6:125105063-125105064(+) m6A CDS       25683224//24981863//22608085 chr6:125105206-125105207(+) m6A CDS       25683224//24981863//22608085 chr6:125105248-125105249(+) m6A CDS       25683224//24981863//22608085 chr6:125105287-125105288(+) m6A CDS       25683224//24981863//22608085 chr6:125105293-125105294(+) m6A CDS       25683224//24981863//22608085 chr6:125105342-125105343(+) m6A CDS       25683224//24981863//22608085 chr6:125106413-125106414(+) m6A CDS       25683224//24981863//22608085 chr6:125106452-125106453(+) m6A CDS       25683224//24981863//22608085 chr6:125106503-125106504(+) m6A CDS       25683224//24981863//22608085 chr6:125106533-125106534(+) m6A CDS       25683224//24981863//22608085 chr6:125106702-125106703(+) m6A CDS       25683224//24981863//22608085 chr6:125106721-125106722(+) m6A CDS       25683224//22608085 chr6:125107518-125107519(+) m6A CDS       25683224//22608085 chr6:125107549-125107550(+) m6A CDS       25683224//22608085 chr6:125110268-125110269(+) m6A CDS       25683224//22608085 chr6:125110290-125110291(+) m6A CDS       25683224//22608085 chr6:125110337-125110338(+) m6A CDS       25683224//22608085 chr6:125113539-125113540(+) m6A CDS       25683224//22608085 chr6:125114069-125114070(+) m6A CDS//exon       24981863//22608085 chr6:125114296-125114297(+) m6A CDS//exon       25683224//24981863 chr6:125114314-125114315(+) m6A CDS//exon       25683224//24981863 chr6:125114368-125114369(+) m6A CDS//exon       25683224//25412662//24981863 chr6:125114379-125114380(+) m6A CDS//exon       25683224//25412662//24981863 chr6:125114386-125114387(+) m6A CDS//exon       25683224//25412662//24981863 chr6:125114543-125114544(+) m6A exon//intron       25683224//25412662//24981863//25456834 chr6:125114554-125114555(+) m6A exon//intron       25683224//25412662//24981863//25456834 chr6:125120132-125120133(+) m6A exon//intron       24981863 chr6:125120141-125120142(+) m6A exon//intron       25683224//24981863 chr6:125120236-125120237(+) m6A CDS//exon       24981863 chr6:125120347-125120348(+) m6A CDS//exon       25412662//24981863 chr6:125120379-125120380(+) m6A CDS//exon       25412662//24981863 chr6:125121529-125121530(+) m6A CDS       25683224//22608085 chr6:125121559-125121560(+) m6A CDS       25683224//22608085 chr6:125121579-125121580(+) m6A CDS       25683224//22608085 chr6:125121617-125121618(+) m6A CDS       25683224//24981863 chr6:125121642-125121643(+) m6A CDS       25683224//24981863 chr6:125121781-125121782(+) m6A intron       22608085 chr6:125121854-125121855(+) m6A intron       22608085 chr6:125121970-125121971(+) m1A CDS       26863196 chr6:125122251-125122252(+) m6A CDS       25683224//25412662//24981863//25456834//22608085 chr6:125122269-125122270(+) m6A CDS       25683224//25412662//24981863//25456834//22608085 chr6:125122518-125122519(+) m6A CDS       25683224//25412662//24981863//25456834//22608085 chr6:125122542-125122543(+) m6A CDS       25683224//25412662//24981863//25456834//22608085 chr6:125122825-125122826(+) m1A CDS       26863196 chr6:125122870-125122871(+) m6A CDS       25683224//25412662//24981863//25456834 chr6:125122907-125122908(+) m6A CDS       25683224//25412662//24981863//25456834 chr6:125122914-125122915(+) m6A CDS       25683224//25412662//24981863//25456834 chr6:125123392-125123393(+) m6A CDS       25412662 chr6:125128799-125128800(+) m6A CDS       25683224//22608085 chr6:125128846-125128847(+) m6A CDS       25683224//25569111//22608085 chr6:125128858-125128859(+) m6A CDS       25683224//25569111//22608085 chr6:125129826-125129827(+) m6A CDS       25683224//25412662//24981863//25569111//22608085 chr6:125129838-125129839(+) m6A CDS       25683224//25412662//24981863//25569111//22608085 chr6:125129933-125129934(+) m6A CDS       25683224//25412662//24981863//25569111 chr6:125129954-125129955(+) m6A CDS       25683224//25412662//24981863//25569111 chr6:125129967-125129968(+) m6A CDS       25683224//25412662//24981863//25456834//25569111 chr6:125130004-125130005(+) m6A 3'UTR       25683224//25412662//24981863//25456834//25569111 chr6:125130087-125130088(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr6:125130128-125130129(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr6:125130190-125130191(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22575960 chr6:125130255-125130256(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22575960 chr6:125130289-125130290(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22575960 chr6:125130421-125130422(+) m6A 3'UTR       25456834//24981863//25569111 chr6:125130459-125130460(+) m6A 3'UTR       25569111 chr6:125130522-125130523(+) m6A 3'UTR       25456834//25569111 chr6:125130538-125130539(+) m6A 3'UTR       25456834//25569111 chr6:125130562-125130563(+) m6A 3'UTR       25456834//25569111

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Chd4	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mghv-miR-M1-3-3p
Interactor2: Chd4

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar