Detail Information

Basic Information:


  VIRBase ID:  

VHID00633855

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-3-3p:           Plekha1:      

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Interactor Information:


Interactor1 Interactor2
Symbol mghv-miR-M1-3-3p Plekha1
miRBase
Accession/Entrez ID		 MIMAT0001566 101476
Organism Murid gammaherpesvirus 4 (MuHV-4) Mus musculus
Category miRNA mRNA
Alias - AA960558//C920009D07Rik//TA//TAPP1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR Plekha1
chr7:138041156(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED Plekha1
chr7:130897642(+) A-I intron -    22524474

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Plekha1
chr7:130865947-130865948(+) m6A 5'UTR//exon       24981863//25569111
chr7:130877796-130877797(+) m6A CDS//exon       25569111//22608085
chr7:130877814-130877815(+) m6A CDS//exon       25569111//22608085
chr7:130892696-130892697(+) m6A exon//intron       22608085
chr7:130900613-130900614(+) m6A CDS//exon       25569111//22608085
chr7:130902183-130902184(+) m6A CDS//exon       25569111//22608085
chr7:130902216-130902217(+) m6A CDS//exon       25569111//22608085
chr7:130902241-130902242(+) m6A CDS//exon       25569111//22608085
chr7:130905407-130905408(+) m6A 3'UTR//CDS//exon       25683224//25569111//22608085
chr7:130905439-130905440(+) m6A 3'UTR//CDS//exon       25683224//25569111//22608085
chr7:130908403-130908404(+) m6A 3'UTR//CDS//exon       25683224//25569111//22608085
chr7:130908451-130908452(+) m6A CDS//exon//intron       25683224//25569111//22608085
chr7:130909612-130909613(+) m6A 3'UTR//CDS//exon//intron       25569111//22608085
chr7:130909704-130909705(+) m6A 3'UTR//intron       25569111//22608085
chr7:130909749-130909750(+) m6A 3'UTR//intron       25569111//22608085
chr7:130910854-130910855(+) m6A 3'UTR//CDS//exon       25456834//25412662//24981863//25569111
chr7:130910994-130910995(+) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr7:130911008-130911009(+) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr7:130911046-130911047(+) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr7:130911061-130911062(+) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr7:130911108-130911109(+) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr7:130911264-130911265(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr7:130911279-130911280(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr7:130911444-130911445(+) m6A 3'UTR       24981863//25456834//25569111
chr7:130911477-130911478(+) m6A 3'UTR       25569111
chr7:130911616-130911617(+) m6A 3'UTR       25683224//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Plekha1
Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):


Interactor1: mghv-miR-M1-3-3p
Interactor2: Plekha1

Evidence Support:


Prediction-Evidence cRep//Rep
Support Database RepTar

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