Basic Information:

  VIRBase ID:  

VHID00633404

  Virus:  

Murid gammaherpesvirus 4 (MuHV-4)

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mghv-miR-M1-3-3p:  MIMAT0001566          Gtf3c5:  NM_001290484     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mghv-miR-M1-3-3p	Gtf3c5
miRBase Accession/Entrez ID	MIMAT0001566	70239
Organism	Murid gammaherpesvirus 4 (MuHV-4)	Mus musculus
Category	miRNA	mRNA
Alias	-	2700084A09Rik//TFIII//TFiiiC2//TFiiiC2-63//TFIIIC63

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Gtf3c5	chr2:28566324-28566325(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr2:28566415-28566416(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr2:28566428-28566429(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr2:28566563-28566564(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr2:28566648-28566649(-) m6A 3'UTR       25683224//25456834//24981863//25569111 chr2:28566764-28566765(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr2:28566789-28566790(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr2:28566898-28566899(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr2:28567013-28567014(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr2:28567053-28567054(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr2:28567061-28567062(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr2:28567143-28567144(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr2:28567152-28567153(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr2:28567655-28567656(-) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr2:28568505-28568506(-) m6A CDS       25683224//25412662//24981863 chr2:28568531-28568532(-) m6A CDS       25683224//25412662//24981863 chr2:28568550-28568551(-) m6A CDS       25683224//25412662//24981863 chr2:28568589-28568590(-) m6A CDS       25683224//25412662 chr2:28568595-28568596(-) m6A CDS       25683224//25412662 chr2:28568773-28568774(-) m6A exon//intron       25683224//25412662 chr2:28568799-28568800(-) m6A exon//intron       25683224//25412662 chr2:28568836-28568837(-) m6A exon//intron       25683224//25412662 chr2:28568853-28568854(-) m6A exon//intron       25683224//25412662 chr2:28581162-28581163(-) m6A 3'UTR//intron       24981863 chr2:28581428-28581429(-) m6A 3'UTR//intron       25412662//25569111 chr2:28582853-28582854(-) m6A CDS//exon       25412662//24981863//25569111 chr2:28582927-28582928(-) m6A CDS//exon       25412662//24981863//25569111 chr2:28582951-28582952(-) m6A CDS//exon       24981863//25569111 chr2:28582986-28582987(-) m6A 5'UTR//exon       24981863//25569111 chr2:28582991-28582992(-) m6A 5'UTR//exon       24981863//25569111 chr2:28583007-28583008(-) m6A 5'UTR//exon       24981863//25569111 chr2:28583046-28583047(-) m6A 5'UTR//exon       24981863//25569111 chr2:28583062-28583063(-) m6A 5'UTR//exon       24981863//25569111 chr2:28583068-28583069(-) m6A 5'UTR//exon       24981863//25569111 chr2:28583143-28583144(-) m6A 5'UTR//exon       24981863//25569111

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Gtf3c5	Cytoplasm Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mghv-miR-M1-3-3p
Interactor2: Gtf3c5

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar